Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n23
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|c...    29   0.81 
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    28   1.9  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   2.5  
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch...    27   3.3  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   4.3  

>SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 50

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 678 NCSRTAGCAHCSRAAGCARSSTSGRASCAHCSRAA 782
           +C    GC  C  + GC +SS      C+ C  A+
Sbjct: 16  DCQSKCGCQDCKESCGC-KSSAVDNCKCSSCKCAS 49


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +2

Query: 320 CNYYRRDHAVCRKSKTPTPQDVSWHSSVEPLFRT*LYS*DREINDHFTGTV*SQY 484
           C  Y    A  +   + +P ++S HS+ +PL  T + S   +  D F+G+  S +
Sbjct: 63  CEGYPNSAAQMQAMGSVSPPELSVHSAQQPLIPTSIASSSAQTGDTFSGSSQSNF 117


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -3

Query: 748 PEVDERAQPAAREQCAQPAVREQLSARSQRHASSAVD 638
           P    +AQPA  ++  +PAV+ +  ++  R A+S+V+
Sbjct: 459 PPTTAKAQPAPEKRRGEPAVQTRNHSKRTRTATSSVE 495


>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 234

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = -3

Query: 748 PEVDERAQPAAREQCAQPAVREQLSARSQRHAS-SAVDLIRWRQRPASADLHDAVPGYSG 572
           P  D     +A  + ++       S R+Q     S VD ++     A A +HD +  Y G
Sbjct: 163 PAPDRHTPSSASSRASETGTTSPQSMRNQISLLYSKVDQVKTEIASAQAVMHDLLRTYPG 222

Query: 571 AHASPPSTET 542
           + +   ST T
Sbjct: 223 SESLQQSTHT 232


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +3

Query: 411  CLEHNYTREIVRLMTTLPV---PSNRNTLSQFCTERHAQLFLRPAA 539
            C++H      + L TTL +   PS +N ++ FC   H +L+ +  A
Sbjct: 1126 CIDHYLNAHKMLLNTTLDISKLPSFQNLVTVFCQSCHKELWYQKNA 1171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,000,969
Number of Sequences: 5004
Number of extensions: 56900
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)