Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n23
         (831 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT021407-1|AAX33555.1|  720|Drosophila melanogaster LD06749p pro...    35   0.16 
AF162774-1|AAF68853.2|  720|Drosophila melanogaster Nopp140-like...    35   0.16 
AE014296-3628|AAF51788.3|  720|Drosophila melanogaster CG7421-PA...    35   0.16 
AE014296-3627|AAF51789.2|  686|Drosophila melanogaster CG7421-PB...    35   0.16 
BT011126-1|AAR82793.1|  208|Drosophila melanogaster LD08644p pro...    29   5.9  
AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P...    29   7.8  

>BT021407-1|AAX33555.1|  720|Drosophila melanogaster LD06749p
           protein.
          Length = 720

 Score = 34.7 bits (76), Expect = 0.16
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
 Frame = -3

Query: 811 TXXAGEPAQVAAREQCAQDARPEVDERAQPAAREQCAQPAVR--EQLSARSQRHASSAVD 638
           T  A +P   AA  + A  +  E D   +PAA++   QPA +   + +A S   +SS  +
Sbjct: 207 TKPAAKPVAKAAPAKKAASSSEESDSDDEPAAKKPAVQPAAKPAPKAAASSSEDSSSEEE 266

Query: 637 LIRWRQRPASADLHDAVPGYSGAHASPPSTETVAAGRK 524
           +     +PA+       P   GA +S  S+    A +K
Sbjct: 267 V-----KPAAKSAAKLAPAKKGASSSDDSSSEDEAPKK 299


>AF162774-1|AAF68853.2|  720|Drosophila melanogaster Nopp140-like
           nucleolar protein protein.
          Length = 720

 Score = 34.7 bits (76), Expect = 0.16
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
 Frame = -3

Query: 811 TXXAGEPAQVAAREQCAQDARPEVDERAQPAAREQCAQPAVR--EQLSARSQRHASSAVD 638
           T  A +P   AA  + A  +  E D   +PAA++   QPA +   + +A S   +SS  +
Sbjct: 207 TKPAAKPVAKAAPAKKAASSSEESDSDDEPAAKKPAVQPAAKPAPKAAASSSEDSSSEEE 266

Query: 637 LIRWRQRPASADLHDAVPGYSGAHASPPSTETVAAGRK 524
           +     +PA+       P   GA +S  S+    A +K
Sbjct: 267 V-----KPAAKSAAKLAPAKKGASSSDDSSSEDEAPKK 299


>AE014296-3628|AAF51788.3|  720|Drosophila melanogaster CG7421-PA,
           isoform A protein.
          Length = 720

 Score = 34.7 bits (76), Expect = 0.16
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
 Frame = -3

Query: 811 TXXAGEPAQVAAREQCAQDARPEVDERAQPAAREQCAQPAVR--EQLSARSQRHASSAVD 638
           T  A +P   AA  + A  +  E D   +PAA++   QPA +   + +A S   +SS  +
Sbjct: 207 TKPAAKPVAKAAPAKKAASSSEESDSDDEPAAKKPAVQPAAKPAPKAAASSSEDSSSEEE 266

Query: 637 LIRWRQRPASADLHDAVPGYSGAHASPPSTETVAAGRK 524
           +     +PA+       P   GA +S  S+    A +K
Sbjct: 267 V-----KPAAKSAAKLAPAKKGASSSDDSSSEDEAPKK 299


>AE014296-3627|AAF51789.2|  686|Drosophila melanogaster CG7421-PB,
           isoform B protein.
          Length = 686

 Score = 34.7 bits (76), Expect = 0.16
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
 Frame = -3

Query: 811 TXXAGEPAQVAAREQCAQDARPEVDERAQPAAREQCAQPAVR--EQLSARSQRHASSAVD 638
           T  A +P   AA  + A  +  E D   +PAA++   QPA +   + +A S   +SS  +
Sbjct: 207 TKPAAKPVAKAAPAKKAASSSEESDSDDEPAAKKPAVQPAAKPAPKAAASSSEDSSSEEE 266

Query: 637 LIRWRQRPASADLHDAVPGYSGAHASPPSTETVAAGRK 524
           +     +PA+       P   GA +S  S+    A +K
Sbjct: 267 V-----KPAAKSAAKLAPAKKGASSSDDSSSEDEAPKK 299


>BT011126-1|AAR82793.1|  208|Drosophila melanogaster LD08644p
           protein.
          Length = 208

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = +3

Query: 615 GRCRQRMRSTALLACRWLRALNCSRTAGCAHCSR--AAGCARS-STSGRASCAHCSRAAT 785
           G C +++  +AL   RWL      R A  ++CS+      +RS S S   SCA C R  +
Sbjct: 138 GECLRQVPESAL---RWLSRSRSRRRARSSNCSQRWTGWSSRSRSASVAPSCATCGRVRS 194

Query: 786 CAGSPAXXVXTART 827
              + A    T+R+
Sbjct: 195 KRRTQARSSWTSRS 208


>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
            protein.
          Length = 23015

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 18/76 (23%), Positives = 25/76 (32%), Gaps = 2/76 (2%)
 Frame = +3

Query: 567  CAPEYPGTASCKSA--DAGRCRQRMRSTALLACRWLRALNCSRTAGCAHCSRAAGCARSS 740
            CAP Y G ++      D   CR    +   +         C    G +      GC  S 
Sbjct: 813  CAPGYTGNSALAGGCNDIDECRANPCAEKAICSNTAGGYLCQCPGGSSGDPYREGCITSK 872

Query: 741  TSGRASCAHCSRAATC 788
            T G +    C+   TC
Sbjct: 873  TVGCSDANPCATGETC 888


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,305,609
Number of Sequences: 53049
Number of extensions: 701450
Number of successful extensions: 2649
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2643
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3942192384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)