Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n23
         (831 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01880.1 68414.m00106 DNA repair protein, putative similar to...    37   0.014
At5g08660.1 68418.m01031 expressed protein contains Pfam domain ...    32   0.41 
At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar ...    31   0.71 
At5g51970.2 68418.m06450 sorbitol dehydrogenase, putative / L-id...    29   2.9  
At5g51970.1 68418.m06449 sorbitol dehydrogenase, putative / L-id...    29   2.9  
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains...    29   2.9  
At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-rel...    29   3.8  
At1g09750.1 68414.m01094 chloroplast nucleoid DNA-binding protei...    28   6.6  
At1g32740.1 68414.m04037 expressed protein                             28   8.7  

>At1g01880.1 68414.m00106 DNA repair protein, putative similar to
           Swiss-Prot:P28706 DNA repair protein rad13
           [Schizosaccharomyces pombe]; similar to UV
           hypersensitive protein [Arabidopsis thaliana]
           gi|13649704|gb|AAK37472
          Length = 570

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
 Frame = +3

Query: 558 GDACAPEYPGTASCKSADAG---RCRQRMRSTALLACRWLRALNCSRTAGCAHCSRAAGC 728
           G+   P  PG    KS D G   R   + RS     C  L +      + C HC   +GC
Sbjct: 247 GNGLQPAVPG--GIKSGDDGEEFRSEMKKRSPHCSRCGHLGSKRTHFKSSCEHCGCDSGC 304

Query: 729 ARSSTSGRASCAHCSR 776
            +     R  C+ CS+
Sbjct: 305 IKKPLGFRCECSFCSK 320



 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +3

Query: 705 HCSRAAGCARSSTSGRASCAHCSRAATCAGSP 800
           HCSR        T  ++SC HC   + C   P
Sbjct: 277 HCSRCGHLGSKRTHFKSSCEHCGCDSGCIKKP 308


>At5g08660.1 68418.m01031 expressed protein contains Pfam domain
           PF05003: protein of unknown function (DUF668)
          Length = 649

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 24/102 (23%), Positives = 43/102 (42%)
 Frame = -3

Query: 763 AQDARPEVDERAQPAAREQCAQPAVREQLSARSQRHASSAVDLIRWRQRPASADLHDAVP 584
           A D R      +QP  +     P +R QL  +  +  +   D+  +R+R A  + +D +P
Sbjct: 23  ADDGREPDFGHSQPNGQTSLIVPGMR-QLMVKDVKEQNQLKDVFSFREREAEDNFYDGIP 81

Query: 583 GYSGAHASPPSTETVAAGRKNNCAWRSVQNCDSVLRLDGTGK 458
            Y+ A    PS + + + +    A   V     +L   G G+
Sbjct: 82  TYTMA----PS-QKIRSAKSTQTAVSKVTEASKLLGKAGLGR 118


>At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar to
           Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
          Length = 97

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 690 TAGCAHCSRA-AGCARSSTSGRASCAHCSRAATCAGSPA 803
           T  C+  S    GC R S SGRA+C++C  + T    PA
Sbjct: 48  TCFCSRWSDGDVGCRRCSGSGRAACSNCGGSGTGRPLPA 86


>At5g51970.2 68418.m06450 sorbitol dehydrogenase, putative /
           L-iditol 2-dehydrogenase, putative similar to
           NAD-dependent sorbitol dehydrogenase from Malus x
           domestica [gi:4519539]
          Length = 364

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
 Frame = +3

Query: 372 RRRMSPGIVPW--NRCLEHNYTREIVRLMTTLPVPSNRNTLSQFCTERHAQLFLRPAATV 545
           R  + PGI  W  N C E  Y   +   M     P    +L+       A L  +    V
Sbjct: 100 RVALEPGISCWRCNLCREGRYN--LCPEMKFFATPPVHGSLANQVVHP-ADLCFKLPENV 156

Query: 546 SVEGGDACAPEYPGTASCKSADAG 617
           S+E G  C P   G  +C+ A+ G
Sbjct: 157 SLEEGAMCEPLSVGVHACRRAEVG 180


>At5g51970.1 68418.m06449 sorbitol dehydrogenase, putative /
           L-iditol 2-dehydrogenase, putative similar to
           NAD-dependent sorbitol dehydrogenase from Malus x
           domestica [gi:4519539]
          Length = 364

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
 Frame = +3

Query: 372 RRRMSPGIVPW--NRCLEHNYTREIVRLMTTLPVPSNRNTLSQFCTERHAQLFLRPAATV 545
           R  + PGI  W  N C E  Y   +   M     P    +L+       A L  +    V
Sbjct: 100 RVALEPGISCWRCNLCREGRYN--LCPEMKFFATPPVHGSLANQVVHP-ADLCFKLPENV 156

Query: 546 SVEGGDACAPEYPGTASCKSADAG 617
           S+E G  C P   G  +C+ A+ G
Sbjct: 157 SLEEGAMCEPLSVGVHACRRAEVG 180


>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
           PROSITE domains, PS00674: AAA-protein family signature
           and PS00017: ATP/GTP-binding site motif A (P-loop)
          Length = 1954

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +3

Query: 621 CRQRMRSTALLACRWLRALNCSR---TAGCAHCSRAAGC 728
           C + +R+ AL   R L+   C R   T GC  C+RA GC
Sbjct: 578 CLKNIRA-ALFRGRSLKCTRCDRPGATTGCRPCARANGC 615


>At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-related
            contains Pfam PF00400: WD domain, G-beta repeat; similar
            to Lipopolysaccharide-responsive and beige-like anchor
            protein (CDC4-like protein) (Beige-like protein)
            (SP:P50851) [Homo sapiens}
          Length = 1280

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -3

Query: 541  VAAGRKNNCAWRSVQNCDSVLRLDGTGKVVINLTISR 431
            V+AG +     RS+   + V R +G GK++ +LT+++
Sbjct: 1210 VSAGDQGQIIVRSMNTLEVVKRYNGAGKIITSLTVTQ 1246


>At1g09750.1 68414.m01094 chloroplast nucleoid DNA-binding
           protein-related contains Pfam profile PF00026:
           Eukaryotic aspartyl protease;b similar to  CND41,
           chloroplast nucleoid DNA binding protein (GI:2541876)
           [Nicotiana tabacum]
          Length = 449

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = +3

Query: 675 LNCSRTAGCAHCSRAAGCARSSTSGRASC--AHC--SRAATCAGS 797
           L CS  +GC++ S +     SST    SC  A C  +R  TC  S
Sbjct: 130 LPCSGCSGCSNASTSFNTNSSSTYSTVSCSTAQCTQARGLTCPSS 174


>At1g32740.1 68414.m04037 expressed protein
          Length = 312

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
 Frame = +3

Query: 546 SVEGGDACAPEYPGTASCKSADAGRCRQRMRSTALLACRWLRAL-NCSRTA-GCAHC 710
           ++ G D     Y      K  +   CR+R  +  +L CR L     C RTA  C  C
Sbjct: 243 TISGVDDAESVYVDPERVKRPNCKACREREATVVVLPCRHLSICPGCDRTALACPLC 299


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,839,386
Number of Sequences: 28952
Number of extensions: 303246
Number of successful extensions: 790
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)