Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10n22
(427 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0394 - 17261008-17262476,17262554-17262743 29 2.1
08_01_0083 - 604175-605776 28 2.7
08_01_0082 - 588269-588434,590800-591653 28 2.7
01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962 28 2.7
12_01_0827 - 7662180-7662192,7662451-7662764 27 4.8
04_04_0532 + 26058100-26058229,26058355-26058559,26058678-260591... 27 4.8
03_05_0349 + 23356871-23356907,23356995-23357063,23357236-233574... 27 6.3
01_07_0315 - 42692539-42693260,42693357-42693609 27 6.3
08_02_0393 + 16621137-16621139,16621392-16621583,16622559-166226... 27 8.3
01_07_0317 + 42699035-42699305,42699411-42700132 27 8.3
>09_04_0394 - 17261008-17262476,17262554-17262743
Length = 552
Score = 28.7 bits (61), Expect = 2.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 312 KPNEGRRRNRFVPSLLSDVWNVWLLIVAC 226
KP RR +PS S VW V LL+V C
Sbjct: 4 KPTRPHRRPPPLPSKTSGVWPVALLVVLC 32
>08_01_0083 - 604175-605776
Length = 533
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 96 TPAPFFSRYHTQTQKLGLQTPPG*TSHI-QKIQEPFIDK 209
TPAP F R+ +T + + P G HI ++++ P + +
Sbjct: 218 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERPEVQE 256
>08_01_0082 - 588269-588434,590800-591653
Length = 339
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 96 TPAPFFSRYHTQTQKLGLQTPPG*TSHI-QKIQEPFIDK 209
TPAP F R+ +T + + P G HI ++++ P + +
Sbjct: 221 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERPEVQE 259
>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
Length = 774
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 215 EVTEHATINSQTFHTSDSSEGTKRFRRLPSF 307
+++EH T S+ HT S+ ++ RRL SF
Sbjct: 696 KISEHDTDKSRRPHTKKSATSPRKMRRLSSF 726
>12_01_0827 - 7662180-7662192,7662451-7662764
Length = 108
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 213 PKLQNTLLLTARH--STHPTVAKERSDFVACPR 305
PK Q T++ +AR +T + ++RSD ACPR
Sbjct: 25 PKTQQTVVPSARGPTATDQVLPRQRSDRSACPR 57
>04_04_0532 +
26058100-26058229,26058355-26058559,26058678-26059157,
26059262-26059354,26059526-26059636,26059720-26059792,
26060072-26060208,26061040-26061097
Length = 428
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 116 PVSHADAEARVTDAARVDLAHTEDPGAVH*QAAE 217
P + A R T A+VD A EDPG + A E
Sbjct: 87 PQAPPPAPTRATKKAKVDAAKNEDPGGMSAPAKE 120
>03_05_0349 +
23356871-23356907,23356995-23357063,23357236-23357424,
23358148-23358249,23358451-23358582,23359499-23359638,
23360169-23360252,23360608-23360748,23361815-23361916,
23362239-23362409,23362452-23362571
Length = 428
Score = 27.1 bits (57), Expect = 6.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 64 DDGDDKXMFKLCNLCSCSF 8
DD DDK FK+ +L SC F
Sbjct: 93 DDADDKENFKIDSLVSCFF 111
>01_07_0315 - 42692539-42693260,42693357-42693609
Length = 324
Score = 27.1 bits (57), Expect = 6.3
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -1
Query: 196 GSWIFCMCEVYPGGVC-NPSF 137
G FCMC+ YPG C +P F
Sbjct: 79 GCKTFCMCDFYPGVSCGDPRF 99
>08_02_0393 +
16621137-16621139,16621392-16621583,16622559-16622612,
16623041-16623160,16623280-16623501,16623594-16623650,
16623993-16624046,16624395-16624426,16624888-16625023,
16625108-16625278,16625430-16625661,16626018-16626022
Length = 425
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 232 SVFCNFGGLSMNGSWIFCMCEVYPGGVCNPSF 137
S CNF LS+ G +I+ + E++ VC+ SF
Sbjct: 82 SKICNFHTLSLLGYFIYNVLEIFIIIVCSISF 113
>01_07_0317 + 42699035-42699305,42699411-42700132
Length = 330
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Frame = -1
Query: 184 FCMCEVYPGGVC-NPSF 137
FCMC+ YPG C +P F
Sbjct: 89 FCMCDFYPGVSCGDPRF 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,880,333
Number of Sequences: 37544
Number of extensions: 192353
Number of successful extensions: 525
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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