Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n20
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit ...   147   2e-36
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    29   0.66 
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    28   1.1  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    27   2.0  
SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc...    26   6.1  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    26   6.1  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.1  

>SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit
           Apc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score =  147 bits (356), Expect = 2e-36
 Identities = 67/163 (41%), Positives = 109/163 (66%), Gaps = 7/163 (4%)
 Frame = +2

Query: 56  MAGLEKDPLVYERSGTVR------EVGNHAIWSLSSCKPGFGIDQLRDDCMETYWQSDGQ 217
           MA + ++ L  ++S T +      ++GN A W+ SS K GF I  +RDD ++TYWQSDG 
Sbjct: 1   MAQIRQEALKKQKSETQKSTEGFVDIGNLAQWTCSSEKSGFPIRLVRDDNIDTYWQSDGS 60

Query: 218 LPHLVNIQFQKKTMVSHIYIYTDYKLDESYTPSRISIRAGTHFNDLQEIEVIELIEPSGW 397
            PH ++I+F K+  + ++ +Y  Y LDESYTPS + I AGT F DL+ +  +++ EP+GW
Sbjct: 61  QPHTIHIKFVKRVSIKYVSMYLQYTLDESYTPSTLRISAGTGFQDLEIVTTVQVEEPTGW 120

Query: 398 EMIPIKDI-HDRPIRTYMIQIAVLSNHQNGRDTHMRQIKVHSP 523
             +P+ D   +  +  ++IQI +L+NHQ+G+D+H+R IK+++P
Sbjct: 121 VHVPVGDFGRNGLLDVHLIQIKILANHQSGKDSHVRLIKIYAP 163


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 251 KTMVSHIYIYTDYKLDESYTPSRISIRAGTHFNDLQEIEVIELIEPSG 394
           K  ++HI  Y DY +   +   + S+R   HF+  Q+  +I L E +G
Sbjct: 274 KEKLTHIIKYDDYLVHLVHETLQYSVRLEQHFHYTQDPLIIFLFEQNG 321


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 347 NDLQEIEVIELIEPSGWEMIPIKDIHD 427
           +D +EI+  E+ E S WEMI  +D  D
Sbjct: 692 DDFEEIDTDEIEEQSDWEMISNQDASD 718


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +2

Query: 491 THMRQIKVHSPCEPTSFD--INKFRNFSTVQFQQYATIR*YNLLLPIER 631
           T  + + V  P EP S +  +N F  FST +   +A  + Y+LLL  E+
Sbjct: 424 TPRQLLNVKRPTEPASSNSSLNNFSGFSTKKDVLHAIEKVYDLLLDFEQ 472


>SPBC3B9.06c |apg3||autophagy associated protein Apg3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 275

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 212 HQT-ASMFPCSHLSIDQYQILVYRKTNSR*HDYRLLVLFLIF 90
           H T AS+ PC H S+    I  +R+ N      + +VLFL F
Sbjct: 218 HNTMASVHPCKHASVLLKLIKQHRERNDPIRVDQYMVLFLKF 259


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 434 IRTYMIQIAVLSNHQNGRDTHMRQIKVHSPCEPTSFDINK 553
           I T +I  AVLS+H       + + KV   C+P S  + K
Sbjct: 260 IETLLINEAVLSSHLPKIAETLTEAKVTLKCDPASLKVLK 299


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 236 IQFQKKTMVSHIYIYTDYKLDESYTPSRISIRAGTH--FNDLQEIEV 370
           I  Q+K   S IY+ T     ++YTP+R   + G+   FN +   +V
Sbjct: 439 ISLQQKEYNSRIYVDTVADQSQTYTPTRRFTKQGSQGDFNAIHSRKV 485


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,035,038
Number of Sequences: 5004
Number of extensions: 65619
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)