BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmnc10n20 (711 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit ... 147 2e-36 SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch... 29 0.66 SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 28 1.1 SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 27 2.0 SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc... 26 6.1 SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz... 26 6.1 SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.1 >SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit Apc10|Schizosaccharomyces pombe|chr 2|||Manual Length = 189 Score = 147 bits (356), Expect = 2e-36 Identities = 67/163 (41%), Positives = 109/163 (66%), Gaps = 7/163 (4%) Frame = +2 Query: 56 MAGLEKDPLVYERSGTVR------EVGNHAIWSLSSCKPGFGIDQLRDDCMETYWQSDGQ 217 MA + ++ L ++S T + ++GN A W+ SS K GF I +RDD ++TYWQSDG Sbjct: 1 MAQIRQEALKKQKSETQKSTEGFVDIGNLAQWTCSSEKSGFPIRLVRDDNIDTYWQSDGS 60 Query: 218 LPHLVNIQFQKKTMVSHIYIYTDYKLDESYTPSRISIRAGTHFNDLQEIEVIELIEPSGW 397 PH ++I+F K+ + ++ +Y Y LDESYTPS + I AGT F DL+ + +++ EP+GW Sbjct: 61 QPHTIHIKFVKRVSIKYVSMYLQYTLDESYTPSTLRISAGTGFQDLEIVTTVQVEEPTGW 120 Query: 398 EMIPIKDI-HDRPIRTYMIQIAVLSNHQNGRDTHMRQIKVHSP 523 +P+ D + + ++IQI +L+NHQ+G+D+H+R IK+++P Sbjct: 121 VHVPVGDFGRNGLLDVHLIQIKILANHQSGKDSHVRLIKIYAP 163 >SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 678 Score = 29.1 bits (62), Expect = 0.66 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = +2 Query: 251 KTMVSHIYIYTDYKLDESYTPSRISIRAGTHFNDLQEIEVIELIEPSG 394 K ++HI Y DY + + + S+R HF+ Q+ +I L E +G Sbjct: 274 KEKLTHIIKYDDYLVHLVHETLQYSVRLEQHFHYTQDPLIIFLFEQNG 321 >SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe|chr 2|||Manual Length = 959 Score = 28.3 bits (60), Expect = 1.1 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +2 Query: 347 NDLQEIEVIELIEPSGWEMIPIKDIHD 427 +D +EI+ E+ E S WEMI +D D Sbjct: 692 DDFEEIDTDEIEEQSDWEMISNQDASD 718 >SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 744 Score = 27.5 bits (58), Expect = 2.0 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%) Frame = +2 Query: 491 THMRQIKVHSPCEPTSFD--INKFRNFSTVQFQQYATIR*YNLLLPIER 631 T + + V P EP S + +N F FST + +A + Y+LLL E+ Sbjct: 424 TPRQLLNVKRPTEPASSNSSLNNFSGFSTKKDVLHAIEKVYDLLLDFEQ 472 >SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 275 Score = 25.8 bits (54), Expect = 6.1 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Frame = -2 Query: 212 HQT-ASMFPCSHLSIDQYQILVYRKTNSR*HDYRLLVLFLIF 90 H T AS+ PC H S+ I +R+ N + +VLFL F Sbjct: 218 HNTMASVHPCKHASVLLKLIKQHRERNDPIRVDQYMVLFLKF 259 >SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 451 Score = 25.8 bits (54), Expect = 6.1 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +2 Query: 434 IRTYMIQIAVLSNHQNGRDTHMRQIKVHSPCEPTSFDINK 553 I T +I AVLS+H + + KV C+P S + K Sbjct: 260 IETLLINEAVLSSHLPKIAETLTEAKVTLKCDPASLKVLK 299 >SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 527 Score = 25.4 bits (53), Expect = 8.1 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Frame = +2 Query: 236 IQFQKKTMVSHIYIYTDYKLDESYTPSRISIRAGTH--FNDLQEIEV 370 I Q+K S IY+ T ++YTP+R + G+ FN + +V Sbjct: 439 ISLQQKEYNSRIYVDTVADQSQTYTPTRRFTKQGSQGDFNAIHSRKV 485 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,035,038 Number of Sequences: 5004 Number of extensions: 65619 Number of successful extensions: 132 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 129 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 131 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 331187010 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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