Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n20
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0246 + 28634530-28634735,28634841-28634901,28634996-286350...   168   3e-42
06_02_0068 + 11107493-11107653,11109116-11109218,11109311-111094...    29   3.6  
12_01_0294 + 2230539-2230870,2232179-2232574,2232676-2232834,223...    28   8.4  

>05_07_0246 +
           28634530-28634735,28634841-28634901,28634996-28635088,
           28635326-28635391,28635506-28635576,28636225-28636329,
           28637065-28637134
          Length = 223

 Score =  168 bits (409), Expect = 3e-42
 Identities = 89/190 (46%), Positives = 121/190 (63%), Gaps = 24/190 (12%)
 Frame = +2

Query: 104 VREVGNHAIWSLSSCKPGFGIDQLRDDCMETYWQSDGQLPHLVNIQFQKKTMVSHIYIYT 283
           +RE+   A WS+SSCKPG G+  LRDD ++TYWQSDG  PHLVNIQFQKK  +  + +Y 
Sbjct: 36  MREMAKTAAWSVSSCKPGNGVASLRDDNLDTYWQSDGAQPHLVNIQFQKKVQLQLVVVYV 95

Query: 284 DYKLDESYTPSRISIRAGTHFNDLQ----------------------EIEVIELIEPSGW 397
           D+KLDESYTPS+IS+RAG  F++L+                      EI+ +EL +P GW
Sbjct: 96  DFKLDESYTPSKISVRAGDGFHNLKEYIDIRLGRTGKLWQDFVSVNMEIKTVELSKPVGW 155

Query: 398 EMIPIK--DIHDRPIRTYMIQIAVLSNHQNGRDTHMRQIKVHSPCEPTSFDINKFRNFST 571
             I +   D  +  I T+M+QI+VLSNH NGRDTH+RQIK++ P  P       F +F++
Sbjct: 156 VHISLSGADPRETFIHTFMLQISVLSNHLNGRDTHIRQIKIYGP-RPNHVPHQPF-HFTS 213

Query: 572 VQFQQYATIR 601
            +F  Y+T+R
Sbjct: 214 REFVTYSTVR 223


>06_02_0068 + 11107493-11107653,11109116-11109218,11109311-11109423,
            11109502-11109624,11110165-11110266,11110367-11110532,
            11111215-11111331,11111438-11111478,11111735-11111836,
            11111924-11112140,11112271-11112498,11112580-11112707,
            11112804-11112921,11113020-11113235,11113314-11113463,
            11113553-11113629,11113973-11114190,11114443-11114656,
            11114744-11114823,11114898-11115015,11115092-11115262,
            11116124-11116292,11116404-11116447,11116620-11116662,
            11116743-11116888,11118337-11118431,11118579-11119477,
            11120540-11120638,11120907-11121002,11123447-11123568,
            11123675-11123767,11123922-11124114
          Length = 1653

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/91 (20%), Positives = 38/91 (41%)
 Frame = +2

Query: 338  THFNDLQEIEVIELIEPSGWEMIPIKDIHDRPIRTYMIQIAVLSNHQNGRDTHMRQIKVH 517
            +HF    ++E   +IEP    +IP      +  R  ++  A L N      +   + + +
Sbjct: 901  SHFQ-AWKLESASIIEPPCNFIIPFHSQGKKRPRWALVDKAHLHNTWRSSQSSYHRYRTN 959

Query: 518  SPCEPTSFDINKFRNFSTVQFQQYATIR*YN 610
            +   P+S  +N   +   +    Y T+R Y+
Sbjct: 960  ADVSPSSLMVNLMNDLLDLSLHNYETVRSYS 990


>12_01_0294 +
           2230539-2230870,2232179-2232574,2232676-2232834,
           2233109-2233505
          Length = 427

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/78 (20%), Positives = 32/78 (41%)
 Frame = +2

Query: 236 IQFQKKTMVSHIYIYTDYKLDESYTPSRISIRAGTHFNDLQEIEVIELIEPSGWEMIPIK 415
           +   K  ++   Y    ++LD SY           H   L ++  I+ +EP    + PI 
Sbjct: 278 VNTNKTQIIFRTYAPVHFRLDISYRGGDWKTGGTCHLETLPDVTPIKSLEPWADLLEPIN 337

Query: 416 DIHDRPIRTYMIQIAVLS 469
            +    I T ++ + +L+
Sbjct: 338 HVLGNSITTKLVGLDILN 355


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,911,215
Number of Sequences: 37544
Number of extensions: 357243
Number of successful extensions: 806
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)