Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10n20
(711 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6165| Best HMM Match : No HMM Matches (HMM E-Value=.) 179 2e-45
SB_57610| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_29103| Best HMM Match : APC10 (HMM E-Value=0.00051) 38 0.006
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_47085| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45) 28 6.5
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) 28 8.6
SB_48497| Best HMM Match : THAP (HMM E-Value=0.00088) 28 8.6
>SB_6165| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 223
Score = 179 bits (436), Expect = 2e-45
Identities = 91/186 (48%), Positives = 124/186 (66%), Gaps = 4/186 (2%)
Frame = +2
Query: 56 MAGLEKDPLVYERS---GTVREVGNHAIWSLSSCKPGFGIDQLRDDCMETYWQSDGQLPH 226
MAG +D + E + G +RE+G+ A W G + ETYWQSDG PH
Sbjct: 50 MAGRIEDSVAGEENKNNGKLREIGDQAAWLWYRAAEGCNL--------ETYWQSDGPQPH 101
Query: 227 LVNIQFQKKTMVSHIYIYTDYKLDESYTPSRISIRAGTHFNDLQEIEVIELIEPSGWEMI 406
L+NIQF++KT + I IY DYK DESYTPS+IS+RAG F+DL +IE+I+L EP+GW +
Sbjct: 102 LINIQFKRKTAIQKISIYADYKADESYTPSKISVRAGNSFHDLHQIELIQLDEPTGWLTV 161
Query: 407 PIKDIHDRPIRTYMIQIAVLSNHQNGRDTHMRQIKVHSP-CEPTSFDINKFRNFSTVQFQ 583
+ + DRPIRTYM+Q+AVL+NHQNGRDTHMRQIK+ +P C+ + D+ F++V
Sbjct: 162 SLNE-GDRPIRTYMLQVAVLANHQNGRDTHMRQIKIFAPLCDAVNPDM---PTFTSVDCA 217
Query: 584 QYATIR 601
Y+ +R
Sbjct: 218 MYSCVR 223
>SB_57610| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 504
Score = 46.0 bits (104), Expect = 3e-05
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Frame = +2
Query: 167 DQLRDDCMETYWQSDG-QLPHLVNIQFQKKTMVSHIYIYTDYKLDESYTPSRISIRAGT- 340
D L D TYW+SDG Q H V + + ++ +YI D + D++Y P RI I G
Sbjct: 175 DCLTDGDPVTYWESDGNQGRHWVRLSIKPGVIIKRLYIELDAR-DDNYMPYRIIISGGEV 233
Query: 341 -HFNDLQEIEVIELIEPSGWEMIPIKDIHDRPIRTYMIQIAVLSNHQNGRDTHMRQIKVH 517
HF L E+ V + +G ++ + + ++I+I + +G DT + IK+
Sbjct: 234 GHFKQLNEVFVD--LTVTGDVLV----LEEMTQYFHIIEIKIKECKDDGIDTRIHGIKIV 287
Query: 518 S 520
S
Sbjct: 288 S 288
>SB_29103| Best HMM Match : APC10 (HMM E-Value=0.00051)
Length = 717
Score = 38.3 bits (85), Expect = 0.006
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Frame = +2
Query: 194 TYWQSDGQL-PHLVNIQFQKKTMVSHIYIYTDYKLDESYTPSRISIRAG---THFNDLQE 361
+YWQSDG H V ++ + ++ + I D+SY P + + AG TH ++ +
Sbjct: 107 SYWQSDGPARSHWVRLRMRPNVVLKLLSINVA-SADQSYMPQHVVVMAGRDETHLREIAD 165
Query: 362 IEVIELIEPSGWEMIPIKDIHDRPIRTYMIQIAVLSNHQNGRDTHMRQIK 511
+ + + K+ + + QI + H +G DT +R +K
Sbjct: 166 VRIPRYLHNFTQSYPTHKEF---TFNSRLFQINIKRCHSDGCDTRIRGLK 212
>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3592
Score = 37.9 bits (84), Expect = 0.008
Identities = 30/139 (21%), Positives = 62/139 (44%), Gaps = 1/139 (0%)
Frame = +2
Query: 182 DCMETYWQSDG-QLPHLVNIQFQKKTMVSHIYIYTDYKLDESYTPSRISIRAGTHFNDLQ 358
D E+YWQS G Q H + ++ ++ + + D D SY PS + I G + L+
Sbjct: 1280 DGTESYWQSSGPQGKHWIRLELFPDLLIHRLCMTVD-PSDSSYMPSLVVISGGDTVSRLK 1338
Query: 359 EIEVIELIEPSGWEMIPIKDIHDRPIRTYMIQIAVLSNHQNGRDTHMRQIKVHSPCEPTS 538
+I+ + + S ++ + + + P I+I++ +G D + + + + +
Sbjct: 1339 DIKTVHI--GSSDSLVTL--LEEAPEEYRYIEISIRQCKSSGIDCKVHGLTISARPKADE 1394
Query: 539 FDINKFRNFSTVQFQQYAT 595
D+ +F + Q AT
Sbjct: 1395 DDVAASFSFLALDDDQDAT 1413
>SB_47085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 353
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Frame = +2
Query: 104 VREVGNHAIWSLSSCKPGFGIDQLRDDCMETYWQSDGQLPHLVNI-----QFQKKTMVSH 268
V E+ + S+ G D+L + D LPH V++ QF KKT +S
Sbjct: 228 VLEISLPGLKSIKDTALDVGEDRLLLHVDPNRYHLDLDLPHNVDVETCGAQFNKKTKMSD 287
Query: 269 IYIYTDYKL 295
+Y Y Y+L
Sbjct: 288 LYFYLTYEL 296
>SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
Length = 1102
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 299 HLIYSQCKCKYVIPLFFSETVC*PSVEVVHQTASMFPCSHLSI 171
H++ S C C+YV+ S ++C VH S+ PC ++ +
Sbjct: 937 HVVMSLCSCRYVV---MSMSLC----RYVHVVMSLCPCRYVHV 972
>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
Length = 2122
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 338 THFNDLQEIEVIELIEPSGWEMIPIKDIHDRPIRTYMIQIAVLSNHQNGRDTHMRQIKV 514
T ND + E+IEL E + + + +I+DR Y +QIA L N + + Q+++
Sbjct: 1863 TKENDTLQKEIIELREENISQKSKLYEINDR----YELQIAELKNDNEIKQDKIEQLEI 1917
>SB_48497| Best HMM Match : THAP (HMM E-Value=0.00088)
Length = 866
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 419 IHDRPIRTYMIQIAVLSNHQNGRDTHMRQIKV 514
IHDRP +Y +IA +S+H RQ+++
Sbjct: 671 IHDRPSHSYAKEIANISSHVKSGTPLTRQLRL 702
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,514,192
Number of Sequences: 59808
Number of extensions: 446145
Number of successful extensions: 1677
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1674
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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