Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n20
         (711 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18290.1 68415.m02132 anaphase-promoting complex, subunit 10 ...   198   4e-51
At5g53230.1 68418.m06617 hypothetical protein contains Pfam prof...    30   1.7  
At2g18350.1 68415.m02138 zinc finger homeobox family protein / Z...    28   5.3  
At1g19260.1 68414.m02396 hAT dimerisation domain-containing prot...    28   7.0  
At4g09660.1 68417.m01586 hypothetical protein                          27   9.3  

>At2g18290.1 68415.m02132 anaphase-promoting complex, subunit 10
           family / APC10 family contains Pfam PF03256:
           Anaphase-promoting complex, subunit 10 (APC10) domain;
           similar to anaphase promoting complex subunit APC10
           (GI:6463666) [Homo sapiens]
          Length = 192

 Score =  198 bits (482), Expect = 4e-51
 Identities = 90/168 (53%), Positives = 126/168 (75%), Gaps = 2/168 (1%)
 Frame = +2

Query: 104 VREVGNHAIWSLSSCKPGFGIDQLRDDCMETYWQSDGQLPHLVNIQFQKKTMVSHIYIYT 283
           +RE+G +A WS+SSCKPG G+  LRDD +ETYWQSDG  PHL+NIQFQKK  +  + +Y 
Sbjct: 27  LREMGKNAAWSVSSCKPGNGVTTLRDDNLETYWQSDGLQPHLINIQFQKKVKLQLVVLYV 86

Query: 284 DYKLDESYTPSRISIRAGTHFNDLQEIEVIELIEPSGWEMIPIK--DIHDRPIRTYMIQI 457
           D+KLDESYTPS+ISIRAG  F++L+EI+ +EL++P+GW  + +   D  +  + T+M+QI
Sbjct: 87  DFKLDESYTPSKISIRAGDGFHNLKEIKSVELVKPTGWVCLSLSGTDPRETFVNTFMLQI 146

Query: 458 AVLSNHQNGRDTHMRQIKVHSPCEPTSFDINKFRNFSTVQFQQYATIR 601
           A+LSNH NGRDTH+RQIKV+ P  P       F+ F++++F  Y+T+R
Sbjct: 147 AILSNHLNGRDTHIRQIKVYGP-RPNPIPHQPFQ-FTSMEFLTYSTLR 192


>At5g53230.1 68418.m06617 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 358

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/49 (38%), Positives = 23/49 (46%)
 Frame = -3

Query: 247 LKLYVNQVWKLSIRLPVCFHAVISQLINTKSWFTGRQTPDSMITDFSYC 101
           + L +NQ WKL  R PV   A  S L +    F+  QTP   I D   C
Sbjct: 1   MSLLLNQHWKLCFRKPVL--ARSSPLHSNGLSFSSLQTPPCFIVDAEPC 47


>At2g18350.1 68415.m02138 zinc finger homeobox family protein /
           ZF-HD homeobox family protein
          Length = 262

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +2

Query: 278 YTDYKLDE--SYTPSRISIRAGTHFNDLQEIEVIELIEPSGWEMIPIKD 418
           ++ Y +D+   Y P +   R  T FN+ Q+ +++E  E  GW M  ++D
Sbjct: 184 FSGYGVDQFHHYQPKK---RFRTKFNEEQKEKMMEFAEKIGWRMTKLED 229


>At1g19260.1 68414.m02396 hAT dimerisation domain-containing protein
          Length = 769

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 458 AVLSNHQNGRDTHMRQIKVHSPCEP 532
           ++LS H N RD   R+  +  PC+P
Sbjct: 29  SILSYHPNQRDEVRREYLIRGPCQP 53


>At4g09660.1 68417.m01586 hypothetical protein
          Length = 664

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 458 AVLSNHQNGRDTHMRQIKVHSPCEP 532
           ++LS H N RD   R+  +  PC+P
Sbjct: 29  SILSYHLNQRDEVRREYLIRGPCQP 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,222,765
Number of Sequences: 28952
Number of extensions: 316802
Number of successful extensions: 709
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)