Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10n18
(658 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 448 e-125
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 285 8e-76
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 282 5e-75
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 279 3e-74
UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R... 274 1e-72
UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Glob... 271 8e-72
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 270 3e-71
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 267 1e-70
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 266 3e-70
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 266 4e-70
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 263 3e-69
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 255 6e-67
UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovi... 250 2e-65
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 243 3e-63
UniRef50_P36352 Cluster: RNA replicase polyprotein; n=2; Physali... 116 7e-25
UniRef50_Q80QV2 Cluster: RNA-dependent RNA polymerase; n=1; Oyst... 104 2e-21
UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep: R... 97 4e-19
UniRef50_P20951 Cluster: RNA replication protein (176 kDa protei... 97 4e-19
UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replic... 89 1e-16
UniRef50_P09395 Cluster: RNA replication protein (165 kDa protei... 87 3e-16
UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X... 87 3e-16
UniRef50_Q6RBY9 Cluster: Replicase; n=2; Poplar mosaic virus|Rep... 87 3e-16
UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protei... 87 3e-16
UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|... 87 5e-16
UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase R... 85 1e-15
UniRef50_P28897 Cluster: RNA replication protein (150 kDa protei... 85 2e-15
UniRef50_Q85214 Cluster: Replicase; n=1; Potato virus T|Rep: Rep... 84 2e-15
UniRef50_P15095 Cluster: RNA replication protein (186 kDa protei... 84 2e-15
UniRef50_Q65980 Cluster: RNA replicase; n=85; Flexiviridae|Rep: ... 84 3e-15
UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4; Po... 83 6e-15
UniRef50_P15402 Cluster: RNA replication protein (147 kDa protei... 83 6e-15
UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Re... 83 8e-15
UniRef50_Q993S7 Cluster: RNA-dependant RNA polymerase; n=74; Ban... 82 1e-14
UniRef50_Q6YI57 Cluster: Polyprotein; n=1; Sclerotinia sclerotio... 82 1e-14
UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root... 81 2e-14
UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic v... 81 2e-14
UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replic... 81 3e-14
UniRef50_Q0Z8V5 Cluster: ORF 1; n=1; Chenopodium mosaic virus X|... 81 3e-14
UniRef50_Q4F978 Cluster: RNA-dependent RNA polymerase; n=19; Fle... 80 4e-14
UniRef50_Q5K4J4 Cluster: RNA-directed RNA polymerase; n=154; Pep... 80 5e-14
UniRef50_Q5L4G0 Cluster: RNA dependent RNA polymerase; n=1; Swee... 79 7e-14
UniRef50_P37987 Cluster: RNA replication protein (ORF 1 protein)... 79 7e-14
UniRef50_Q0VZD1 Cluster: RNA-dependent RNA polymerase; n=1; Narc... 78 2e-13
UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep: Repl... 78 2e-13
UniRef50_O91901 Cluster: Replicase; n=76; Rupestris stem pitting... 77 3e-13
UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep: Rep... 77 3e-13
UniRef50_Q5GR23 Cluster: Replicase; n=1; Daphne virus S|Rep: Rep... 76 7e-13
UniRef50_A7TZR7 Cluster: Replicase; n=1; Coleus vein necrosis vi... 76 7e-13
UniRef50_A0AAQ6 Cluster: RNA-dependent RNA polymerase; n=1; Narc... 76 7e-13
UniRef50_Q6PLS1 Cluster: Genome polyprotein (241 kDa polyprotein... 76 7e-13
UniRef50_Q6UNJ1 Cluster: Replication-associated protein; n=6; Po... 75 1e-12
UniRef50_P17965 Cluster: RNA replication protein (147 kDa protei... 75 2e-12
UniRef50_A4ZWC5 Cluster: Replicase; n=2; Carlavirus|Rep: Replica... 75 2e-12
UniRef50_Q9E948 Cluster: RNA polymerase; n=17; Flexiviridae|Rep:... 74 3e-12
UniRef50_Q52V15 Cluster: Replicase; n=17; Flexiviridae|Rep: Repl... 74 3e-12
UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61; Tric... 73 6e-12
UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protei... 72 1e-11
UniRef50_Q91BP7 Cluster: RNA polymerase; n=3; Flexiviridae|Rep: ... 71 2e-11
UniRef50_P22657 Cluster: RNA replication protein (152 kDa protei... 71 3e-11
UniRef50_Q67654 Cluster: Replicase; n=5; Carlavirus|Rep: Replica... 70 4e-11
UniRef50_P22168 Cluster: RNA replication protein (152 kDa protei... 69 8e-11
UniRef50_Q8B3K7 Cluster: RNA-dependent RNA polymerase; n=7; Grap... 63 5e-09
UniRef50_Q1WAJ5 Cluster: 27 kDa protein; n=1; White ash mosaic v... 60 5e-08
UniRef50_Q04610 Cluster: Non-structural polyprotein; n=538; root... 51 2e-05
UniRef50_Q6QLN1 Cluster: Non-structural polyprotein; n=40; root|... 48 3e-04
UniRef50_Q5VI74 Cluster: RNA-dependent RNA polymerase; n=1; Frag... 47 5e-04
UniRef50_Q0WYB5 Cluster: Nonstructural protein; n=141; Hepatitis... 46 8e-04
UniRef50_Q91NQ3 Cluster: Polymerase P2; n=2; Prune dwarf virus|R... 42 0.010
UniRef50_P03593 Cluster: RNA-directed RNA polymerase 2A; n=1; Al... 42 0.017
UniRef50_Q6JE41 Cluster: P2 protein; n=1; Humulus japonicus late... 40 0.069
UniRef50_A5JM40 Cluster: Polyprotein; n=9; Crinivirus|Rep: Polyp... 40 0.069
UniRef50_Q8JJW9 Cluster: Polyprotein; n=4; Sweet potato chloroti... 39 0.092
UniRef50_Q6RK13 Cluster: P2 protein; n=6; Ilarvirus subgroup 1|R... 39 0.092
UniRef50_Q7T737 Cluster: RNA-dependent RNA polymerase; n=11; roo... 38 0.28
UniRef50_Q6JGW4 Cluster: ORF 1a/1b fusion polyprotein; n=7; Stra... 37 0.37
UniRef50_Q9Q703 Cluster: P348; n=7; Beet yellows virus|Rep: P348... 37 0.49
UniRef50_Q9DUT2 Cluster: Putative 2a protein; n=1; Pelargonium z... 37 0.49
UniRef50_Q6VRA8 Cluster: ORF 1a/1b fusion polyprotein; n=14; Cri... 37 0.49
UniRef50_Q83045 Cluster: RNA-dependent RNA polymerase; n=7; Crin... 36 0.86
UniRef50_Q86783 Cluster: RNA-directed RNA polymerase 2A; n=94; C... 35 1.5
UniRef50_Q66107 Cluster: Polymerase; n=11; Ilarvirus subgroup 2|... 35 2.0
UniRef50_A7NVU4 Cluster: Chromosome chr18 scaffold_1, whole geno... 35 2.0
UniRef50_Q997A3 Cluster: Putative polymerase p2; n=1; American p... 34 2.6
UniRef50_A4RF10 Cluster: Putative uncharacterized protein; n=1; ... 34 3.5
UniRef50_Q61PF6 Cluster: Putative uncharacterized protein CBG075... 33 4.6
UniRef50_A7SNG1 Cluster: Predicted protein; n=1; Nematostella ve... 33 4.6
UniRef50_Q8BEP8 Cluster: RNA-dependent RNA polymerase; n=75; Clo... 33 6.0
UniRef50_Q9LFY6 Cluster: T7N9.5; n=2; Arabidopsis thaliana|Rep: ... 33 6.0
UniRef50_A7TSR0 Cluster: Putative uncharacterized protein; n=1; ... 33 6.0
UniRef50_A4QTP3 Cluster: Putative uncharacterized protein; n=4; ... 33 6.0
UniRef50_Q8Q064 Cluster: Putative uncharacterized protein; n=1; ... 33 6.0
UniRef50_Q91NQ0 Cluster: Polymerase p2; n=5; Ilarvirus|Rep: Poly... 33 8.0
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 448 bits (1105), Expect = e-125
Identities = 208/219 (94%), Positives = 208/219 (94%)
Frame = +2
Query: 2 DLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNI 181
DLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNI
Sbjct: 1465 DLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNI 1524
Query: 182 TSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSGDDSLVSPPPPAHPDW 361
TSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSGDDSLVSPPPPAHPDW
Sbjct: 1525 TSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSGDDSLVSPPPPAHPDW 1584
Query: 362 DAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLS 541
DAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPR DDRTLPDKIASYLS
Sbjct: 1585 DAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRALLAKLVLALDDRTLPDKIASYLS 1644
Query: 542 EFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKEQ 658
EFVVGHSLGD FWTLLPADQVIYQSALFDFFCRECSKEQ
Sbjct: 1645 EFVVGHSLGDAFWTLLPADQVIYQSALFDFFCRECSKEQ 1683
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 285 bits (698), Expect = 8e-76
Identities = 129/218 (59%), Positives = 163/218 (74%)
Frame = +2
Query: 2 DLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNI 181
+++ + ++LKP + V NDY++FDQSQHGEAVV ERKKMERL+IPSHLIDLH ++KTN+
Sbjct: 1568 EMANWCRANLKPGE-RVANDYTSFDQSQHGEAVVFERKKMERLNIPSHLIDLHIHLKTNV 1626
Query: 182 TSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSGDDSLVSPPPPAHPDW 361
++QFGPLTCMRLTGEPGTYDDNTDYN+AV++ EY + + VSGDDSL+ PP +P W
Sbjct: 1627 STQFGPLTCMRLTGEPGTYDDNTDYNLAVLHLEYLVGSTPCMVSGDDSLLGREPPRNPIW 1686
Query: 362 DAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLS 541
AV PLL+L FKKE R G FCGYY+G G IR+P DD T+ +K+ SY +
Sbjct: 1687 QAVKPLLALRFKKERTRYGEFCGYYVGCEGCIRSPMALFAKLMVCVDDGTIEEKMISYAT 1746
Query: 542 EFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKE 655
EF +GHSLGD FW LLP D V +QSA+FDFFCR ++
Sbjct: 1747 EFSIGHSLGDAFWNLLPIDAVPFQSAVFDFFCRHAPED 1784
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 282 bits (692), Expect = 5e-75
Identities = 130/219 (59%), Positives = 159/219 (72%)
Frame = +2
Query: 2 DLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNI 181
++S +A HL+ H NDY+AFDQSQHGEAVV E KM RLSIP LI+LH Y+K N+
Sbjct: 1492 EMSEWAQKHLQSGISHT-NDYTAFDQSQHGEAVVFEMAKMRRLSIPESLINLHSYLKRNV 1550
Query: 182 TSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSGDDSLVSPPPPAHPDW 361
+QFGPLTCMRLTGEPGTYDDNTDYN+AVIYS+Y + + VSGDDS++ P +W
Sbjct: 1551 DTQFGPLTCMRLTGEPGTYDDNTDYNLAVIYSKYLVLDHPIMVSGDDSVIGGNPTVSRNW 1610
Query: 362 DAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLS 541
A+ LL+L FK E ++ LFCGYY+GPAGAIR+P DD ++ DK+ASYLS
Sbjct: 1611 PAIEKLLALRFKTESTKHPLFCGYYVGPAGAIRSPITLFAKIMSAVDDLSIDDKLASYLS 1670
Query: 542 EFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKEQ 658
EF +GHSLG FW LLP DQV YQSA++DFFCR S+EQ
Sbjct: 1671 EFAIGHSLGHDFWDLLPIDQVPYQSAVYDFFCRHASREQ 1709
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 279 bits (685), Expect = 3e-74
Identities = 124/213 (58%), Positives = 158/213 (74%)
Frame = +2
Query: 2 DLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNI 181
+++ + +HL P + + NDY+AFDQSQHGEAVV ER KM RLSIP+ L+DLH Y+KTN+
Sbjct: 1495 EMADWCRAHLTPA-VKLANDYTAFDQSQHGEAVVFERYKMNRLSIPAELVDLHVYLKTNV 1553
Query: 182 TSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSGDDSLVSPPPPAHPDW 361
++QFGPLTCMRLTGEPGTYDDNTDYNIAV++ EY + + + VSGDDSL+ PP W
Sbjct: 1554 STQFGPLTCMRLTGEPGTYDDNTDYNIAVLHLEYAVGSTPLMVSGDDSLLDSEPPVRDQW 1613
Query: 362 DAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLS 541
A++P+L+LTFKKE R FCGYY+G GA+R+P DD ++ DK+ +YL+
Sbjct: 1614 SAIAPMLALTFKKERGRYATFCGYYVGFTGAVRSPPALFAKLMIAVDDGSISDKLIAYLT 1673
Query: 542 EFVVGHSLGDPFWTLLPADQVIYQSALFDFFCR 640
EF VGHS GD FWT+LP + V YQSA FDFFCR
Sbjct: 1674 EFTVGHSSGDAFWTILPVEAVPYQSACFDFFCR 1706
>UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep:
Replicase - Grapevine fleck virus
Length = 1949
Score = 274 bits (672), Expect = 1e-72
Identities = 126/217 (58%), Positives = 156/217 (71%)
Frame = +2
Query: 5 LSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNIT 184
LS + +HL P +H+ NDY+AFDQSQHGEAVVLE KM R SIP I LH ++KTNI
Sbjct: 1671 LSEWCQNHLTP-SVHLANDYTAFDQSQHGEAVVLEAWKMRRASIPEPFITLHVHVKTNIE 1729
Query: 185 SQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSGDDSLVSPPPPAHPDWD 364
QFGPLTCMR+TGEPGTYDDNTDYN+A++Y++Y + V VSGDDSLV PP +P W
Sbjct: 1730 CQFGPLTCMRITGEPGTYDDNTDYNLAILYTQYLLHRTPVLVSGDDSLVDRVPPMNPSWP 1789
Query: 365 AVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSE 544
A++PL +L K E GLFCGY++GPAGA+RAPR +D +LP+KIASY++E
Sbjct: 1790 ALAPLFALKPKPETSPFGLFCGYFVGPAGAVRAPRALFAKLAIALEDGSLPEKIASYVAE 1849
Query: 545 FVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKE 655
F VG SLGD W+L+P + VIYQSA FD CR S +
Sbjct: 1850 FSVGQSLGDSLWSLIPPELVIYQSACFDLICRHASPQ 1886
>UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Globe
virus|Rep: Replicase RdRp - Grapevine Red Globe virus
Length = 424
Score = 271 bits (665), Expect = 8e-72
Identities = 129/217 (59%), Positives = 155/217 (71%), Gaps = 2/217 (0%)
Frame = +2
Query: 2 DLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNI 181
+LS + +H+K Q H+ NDY+A+DQSQ GEAVVLER KM R+SIP LIDLH ++KTN+
Sbjct: 59 ELSTWCQAHMKT-QHHLTNDYTAYDQSQGGEAVVLERLKMLRVSIPQPLIDLHVHLKTNV 117
Query: 182 TSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEY--DITTQTVFVSGDDSLVSPPPPAHP 355
+Q GPLT MRLTGEPGTYDDN+DYN+AV +++ D V +SGDD +SPPPP P
Sbjct: 118 DTQLGPLTSMRLTGEPGTYDDNSDYNLAVTAAKFILDPEVHAVLISGDDLDISPPPPVRP 177
Query: 356 DWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASY 535
W + +LSL FK E R GLFCGYYLGPAGA+R+P DD ++ DK ASY
Sbjct: 178 TWPILEAMLSLRFKTEVSRYGLFCGYYLGPAGAVRSPLALFAKLIIAVDDGSIEDKKASY 237
Query: 536 LSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCREC 646
LSEF VGHSLG WTLLP +QV YQSA FDFFCR C
Sbjct: 238 LSEFAVGHSLGQDMWTLLPENQVPYQSANFDFFCRNC 274
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 270 bits (661), Expect = 3e-71
Identities = 124/218 (56%), Positives = 149/218 (68%)
Frame = +2
Query: 5 LSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNIT 184
L + HL + NDY+AFDQSQHGE+VVLE KM+RL+IPSHLI LH ++KTN++
Sbjct: 1560 LRDWCQEHLTHSTPKIANDYTAFDQSQHGESVVLEALKMKRLNIPSHLIQLHVHLKTNVS 1619
Query: 185 SQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSGDDSLVSPPPPAHPDWD 364
+QFGPLTCMRLTGEPGTYDDNTDYN+AVIYS+YD+ + + VSGDDSL+ P P DW
Sbjct: 1620 TQFGPLTCMRLTGEPGTYDDNTDYNLAVIYSQYDVGSCPIMVSGDDSLIDHPLPTRHDWP 1679
Query: 365 AVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSE 544
+V L L FK E + LFCGYY+GPAG IR P DD L D+ SYL+E
Sbjct: 1680 SVLKRLHLRFKLELTSHPLFCGYYVGPAGCIRNPLALFCKLMIAVDDDALDDRRLSYLTE 1739
Query: 545 FVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKEQ 658
F GH LG+ W LLP V YQSA FDFFCR C + +
Sbjct: 1740 FTTGHLLGESLWHLLPETHVQYQSACFDFFCRRCPRHE 1777
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 267 bits (655), Expect = 1e-70
Identities = 124/217 (57%), Positives = 150/217 (69%)
Frame = +2
Query: 5 LSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNIT 184
+S + +HL P + + NDY+AFDQSQHGEAVVLERKKMERLSIP HLI LH ++KT++
Sbjct: 1537 MSLWCQTHLTPA-VKLANDYTAFDQSQHGEAVVLERKKMERLSIPDHLISLHVHLKTHVE 1595
Query: 185 SQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSGDDSLVSPPPPAHPDWD 364
+QFGPLTCMRLTGEPGTYDDNTDYN+AVI EY VSGDDSL+ PP P+W
Sbjct: 1596 TQFGPLTCMRLTGEPGTYDDNTDYNLAVINLEYAAAHVPTMVSGDDSLLDFEPPRRPEWV 1655
Query: 365 AVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSE 544
A+ PLL+L FKKE FCGYY G +R+P DD ++ DK+A+YL E
Sbjct: 1656 AIEPLLALRFKKERGLYATFCGYYASRVGCVRSPIALFAKLAIAVDDSSISDKLAAYLME 1715
Query: 545 FVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKE 655
F VGHSLGD W+ LP V +QSA FDFFCR ++
Sbjct: 1716 FAVGHSLGDSLWSALPLSAVPFQSACFDFFCRRAPRD 1752
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 266 bits (652), Expect = 3e-70
Identities = 125/213 (58%), Positives = 149/213 (69%)
Frame = +2
Query: 2 DLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNI 181
DLS + +HL QI + NDY+AFDQSQHGE+V+LE KM+RLSIPSHLI LH ++KTN+
Sbjct: 1589 DLSAWCQTHLTG-QIKLTNDYTAFDQSQHGESVILEALKMKRLSIPSHLIQLHVHLKTNV 1647
Query: 182 TSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSGDDSLVSPPPPAHPDW 361
+QFGPLTCMRLTGEPGTYDDN+DYN+AVI+S++D+ V VSGDDSL+ PP W
Sbjct: 1648 ATQFGPLTCMRLTGEPGTYDDNSDYNLAVIHSQFDMKDIPVMVSGDDSLIDRQPPLAQSW 1707
Query: 362 DAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLS 541
+A LL L FK E + LFCGYY G AGAIR P DD + D+ SYL+
Sbjct: 1708 EATKRLLHLRFKTEKTTHPLFCGYYTGSAGAIRNPLALFSKLMIAIDDEAIHDRRLSYLT 1767
Query: 542 EFVVGHSLGDPFWTLLPADQVIYQSALFDFFCR 640
EF GH LGD WTLLP IYQSA FD+FCR
Sbjct: 1768 EFSTGHQLGDALWTLLPESTQIYQSACFDYFCR 1800
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 266 bits (651), Expect = 4e-70
Identities = 124/216 (57%), Positives = 149/216 (68%)
Frame = +2
Query: 5 LSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNIT 184
+S + HL + + NDY+AFDQSQHGEAVVLERKKMERLSIP LIDLH ++KT+++
Sbjct: 1675 MSNWCQQHLTTA-VKLANDYTAFDQSQHGEAVVLERKKMERLSIPQALIDLHIHLKTHVS 1733
Query: 185 SQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSGDDSLVSPPPPAHPDWD 364
+QFGPLTCMRLTGEPGTYDDN+DYN+AVI EY VSGDDSL+ PP P+W
Sbjct: 1734 TQFGPLTCMRLTGEPGTYDDNSDYNLAVINCEYMAANTPTMVSGDDSLLDREPPTRPEWV 1793
Query: 365 AVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSE 544
+ PLLSL FKKE R FCGYY G +R+P DD ++ DK+ASYLSE
Sbjct: 1794 ILQPLLSLRFKKERGRYATFCGYYASHVGCVRSPVALFAKLAIAVDDGSISDKMASYLSE 1853
Query: 545 FVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSK 652
F +GHSLGD W LP + V +QSA FDFFCR +
Sbjct: 1854 FALGHSLGDHLWEALPLEAVPFQSACFDFFCRRAPR 1889
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|Rep:
Replicase - Dulcamara mottle virus
Length = 1742
Score = 263 bits (644), Expect = 3e-69
Identities = 119/219 (54%), Positives = 156/219 (71%)
Frame = +2
Query: 2 DLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNI 181
DLS + ++L Q+++ NDY++FDQSQHGEAVVLE KM+RL IP LI+LH ++KTN+
Sbjct: 1458 DLSIWCKTNLSH-QVYIENDYTSFDQSQHGEAVVLEVLKMQRLQIPKELIELHVHLKTNV 1516
Query: 182 TSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSGDDSLVSPPPPAHPDW 361
+QFGPLTCMRLTGEPGTYDDNTDYN+AVIYS+Y + + VSGDDS+V+ PP +P W
Sbjct: 1517 DTQFGPLTCMRLTGEPGTYDDNTDYNLAVIYSQYSMGSTPCLVSGDDSVVAGQPPVNPAW 1576
Query: 362 DAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLS 541
+A+ LL L FK LFCGYY+ P GA+R P DD ++P+K SYLS
Sbjct: 1577 NAIKNLLHLKFKTHCSAYPLFCGYYVSPVGAVRNPHALFAKLMIAHDDGSIPEKKLSYLS 1636
Query: 542 EFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKEQ 658
EF VGHS+G FW+ +P YQ+A+++FFCR CS+ +
Sbjct: 1637 EFSVGHSIGHEFWSAIPDSIHCYQAAVYNFFCRHCSRSE 1675
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 255 bits (625), Expect = 6e-67
Identities = 121/219 (55%), Positives = 147/219 (67%)
Frame = +2
Query: 2 DLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNI 181
DL R+ S HL+ NDY+AFDQSQHGEAVV E KM RLSIP +LI LH ++KTN+
Sbjct: 1462 DLRRWCSKHLETSHC-TTNDYTAFDQSQHGEAVVFEVLKMRRLSIPENLISLHVHLKTNV 1520
Query: 182 TSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSGDDSLVSPPPPAHPDW 361
+QFGPLTCMRLTGEPGTYDDNTDYN+AV+ +YD+ VSGDDS +S +W
Sbjct: 1521 ETQFGPLTCMRLTGEPGTYDDNTDYNLAVLNLQYDLRKTPTLVSGDDSYLSGTLSPRSNW 1580
Query: 362 DAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLS 541
V LL L K + +GLFCGYYLGP G IR P DD + DK+ SYL+
Sbjct: 1581 PFVKELLHLRLKPSSLIDGLFCGYYLGPQGCIRNPLALFAKLMIAEDDGSAFDKLPSYLT 1640
Query: 542 EFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKEQ 658
EF +GH LGD W LLP+D V+YQSA FD+FCR+ ++ Q
Sbjct: 1641 EFSIGHGLGDSLWQLLPSDLVLYQSACFDYFCRKATRSQ 1679
>UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11;
Tymovirus|Rep: RNA replicase polyprotein - Ononis yellow
mosaic virus
Length = 1776
Score = 250 bits (612), Expect = 2e-65
Identities = 117/219 (53%), Positives = 147/219 (67%)
Frame = +2
Query: 2 DLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNI 181
+LS ++ S LK ++CNDY++FDQSQHGEAV+ E KM R+ IP HLIDLH Y+KTN+
Sbjct: 1485 ELSAWSHSFLKG-DAYICNDYTSFDQSQHGEAVIFESLKMHRVGIPRHLIDLHIYLKTNV 1543
Query: 182 TSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSGDDSLVSPPPPAHPDW 361
++QFGPLTCMRLTGEPGTYDDNTDYN+AVI+S+Y I+ + VSGDDS++ PP +P+W
Sbjct: 1544 STQFGPLTCMRLTGEPGTYDDNTDYNLAVIFSQYVISDHPIMVSGDDSVICGHPPINPNW 1603
Query: 362 DAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLS 541
AV LL L FK E LFCGYY+GP G R P D L + + SYL
Sbjct: 1604 PAVEKLLHLRFKTEETSLPLFCGYYVGPTGCCRNPFALFAKLMISYDKGNLFETLPSYLY 1663
Query: 542 EFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKEQ 658
EF +GH LGD L P + Y SA +D FCR+C+ Q
Sbjct: 1664 EFSIGHRLGDVVRLLFPDHLLKYYSACWDLFCRKCTASQ 1702
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 243 bits (594), Expect = 3e-63
Identities = 114/215 (53%), Positives = 145/215 (67%)
Frame = +2
Query: 5 LSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNIT 184
LS++ +HL ++ NDY+AFDQSQHGEAVVLE KM RLSIP LI LH ++K ++
Sbjct: 1556 LSQWCQTHLSGSS-YIANDYTAFDQSQHGEAVVLECLKMRRLSIPDSLIQLHSHLKCSVD 1614
Query: 185 SQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSGDDSLVSPPPPAHPDWD 364
+QFGPLTCMRLTGEPGTYDDN+DYN+AVIYS+Y + + +SGDDS++ PP P W
Sbjct: 1615 TQFGPLTCMRLTGEPGTYDDNSDYNLAVIYSQYSLNGHPILISGDDSVLCGTPPPSPLWP 1674
Query: 365 AVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSE 544
+ +L L FK E + LFCGYY+ P GA R P DD++L DK SYLSE
Sbjct: 1675 TLKKMLHLRFKIERTSHPLFCGYYVSPHGAARNPYALFAKLMICVDDKSLHDKKLSYLSE 1734
Query: 545 FVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECS 649
F GH GD ++LP+ + YQSA+ DFFCR C+
Sbjct: 1735 FSTGHLAGDLVTSILPSHLLPYQSAVHDFFCRNCT 1769
>UniRef50_P36352 Cluster: RNA replicase polyprotein; n=2; Physalis
mottle virus|Rep: RNA replicase polyprotein - Physalis
mottle virus (PhMV) (Belladonna mottle virus-Iowa)
Length = 178
Score = 116 bits (278), Expect = 7e-25
Identities = 53/106 (50%), Positives = 63/106 (59%)
Frame = +2
Query: 341 PPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPD 520
PP P+W A+ LL L FK E + LFCGYYL PAG IR P DD +LP+
Sbjct: 6 PPISPNWPAIKDLLHLKFKTEITSSPLFCGYYLSPAGCIRNPLAHFAKLMTCVDDMSLPE 65
Query: 521 KIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKEQ 658
K+ SYLSE +GH+LGD LP + YQSA FDFFCR C+ Q
Sbjct: 66 KVLSYLSEVSIGHNLGDQIIQHLPPHLIQYQSACFDFFCRNCTPSQ 111
>UniRef50_Q80QV2 Cluster: RNA-dependent RNA polymerase; n=1; Oyster
mushroom spherical virus|Rep: RNA-dependent RNA
polymerase - Oyster mushroom spherical virus
Length = 1581
Score = 104 bits (250), Expect = 2e-21
Identities = 70/209 (33%), Positives = 96/209 (45%), Gaps = 2/209 (0%)
Frame = +2
Query: 2 DLSRFASSHLKPLQIH-VCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTN 178
DL ++A H+ + NDY+A+D+S GE + E M +IP +I+LH +
Sbjct: 1309 DLGQWAREHVPSKRTKSFTNDYTAYDKSCRGETLAFEICIMRLFNIPEWIIELHVELTLC 1368
Query: 179 ITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVF-VSGDDSLVSPPPPAHP 355
+TS G L MR +G+ TY NT YN A +Y T SGDD + P P
Sbjct: 1369 VTSALGKLGIMRTSGQWCTYLFNTWYNDAYFTLKYVFPLNTPRGFSGDDMFILCVPTISP 1428
Query: 356 DWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASY 535
W ++S SL K FCG+ L G IR P ++ TL + + SY
Sbjct: 1429 GWLSISRYFSLVGKPVITFLPEFCGWLLTSHGIIRHPYLLYAKYLFHKENGTLANVLISY 1488
Query: 536 LSEFVVGHSLGDPFWTLLPADQVIYQSAL 622
EF +LGD W LP D + YQ L
Sbjct: 1489 YMEFQHSLTLGDALWESLPYDLLPYQGQL 1517
>UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep:
Replicase - Botrytis virus F
Length = 1896
Score = 96.7 bits (230), Expect = 4e-19
Identities = 58/213 (27%), Positives = 90/213 (42%)
Frame = +2
Query: 2 DLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNI 181
D +F ++H + DY+A+D SQ V E M RL P +I+ + +K +I
Sbjct: 1655 DFEKFVAAHWDHTRESTDGDYTAYDASQDATFVNFETLLMRRLDFPLDIIEAYVEMKASI 1714
Query: 182 TSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSGDDSLVSPPPPAHPDW 361
TS FGPL MR +GE TY NT NIA Y++Y++ + GDD ++ P W
Sbjct: 1715 TSHFGPLAIMRFSGEVWTYLFNTLGNIAFTYAKYEVPSVAQVYGGDDKSINSPITVRTGW 1774
Query: 362 DAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLS 541
+ +L K FCG+ + P G ++ P+ Y
Sbjct: 1775 SQLVGKFNLVEKPVVGYEPTFCGWRIVPGGIVKDPQLLFWRTRYARIRYDAALWAPGYYD 1834
Query: 542 EFVVGHSLGDPFWTLLPADQVIYQSALFDFFCR 640
E V+ D + + + Y AL F+ +
Sbjct: 1835 ELVLSLKTSDRLMDHMSPNDLAYLQALVRFYTK 1867
>UniRef50_P20951 Cluster: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=3;
Potexvirus|Rep: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Papaya mosaic
potexvirus (PMV)
Length = 1547
Score = 96.7 bits (230), Expect = 4e-19
Identities = 64/212 (30%), Positives = 99/212 (46%), Gaps = 9/212 (4%)
Frame = +2
Query: 2 DLSRFASS---HLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIK 172
DLS +A+ H K + ND++AFDQSQ G + E K SIP ++D + IK
Sbjct: 1308 DLSSWAAGEGGHWKFKGPSLANDFTAFDQSQDGAMLQFEILKARHHSIPEDILDAYLTIK 1367
Query: 173 TNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTV-FVSGDDSLVSPPPPA 349
TN G L MRLTGE T+D NT+ NIA +++++I T +GDDS + P
Sbjct: 1368 TNSKIFLGTLAIMRLTGEGPTFDANTECNIAFTHTKFNIPEGTAQLYAGDDSAIDGLPAL 1427
Query: 350 HPDWDAVSPLLSLTFKKEFVRN-----GLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTL 514
P + + L+L K + FCG+ + P G I+ P+ +
Sbjct: 1428 RPSFKMIEQKLTLRSKPQVALQQKGDWAEFCGFRITPKGLIKDPKKLHASWMLEKKKGNV 1487
Query: 515 PDKIASYLSEFVVGHSLGDPFWTLLPADQVIY 610
+ + SY + + + D LL +++ Y
Sbjct: 1488 KNVLRSYELDLALAYQHKDSLHELLSEEELKY 1519
>UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replicase -
Garlic virus C
Length = 1550
Score = 88.6 bits (210), Expect = 1e-16
Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 2/185 (1%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 235
+DY+ +DQSQ + E +K +P ++D + +IKT+ + G L MRL+GE T
Sbjct: 1261 SDYTQYDQSQDAAFLNFELRKARHFGVPEEVVDFYAFIKTHAKTFLGNLAVMRLSGEGPT 1320
Query: 236 YDDNTDYNIA--VIYSEYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFV 409
+D NT+ NIA + + D T + + +GDD + P W PL SL K
Sbjct: 1321 FDANTECNIAYDALRFQLDSTVKACY-AGDDLVRDKACDERPGWKYSEPLFSLKAKPLVT 1379
Query: 410 RNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLL 589
FCG+ L G +++P + + SY +++ + LGD + +
Sbjct: 1380 NKPDFCGWRLTKYGIVKSPVQLYQSLQLALRLGKVEEVKRSYAIDYLFAYRLGDQLYDIF 1439
Query: 590 PADQV 604
D++
Sbjct: 1440 DEDEL 1444
>UniRef50_P09395 Cluster: RNA replication protein (165 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=17; Potato virus
X|Rep: RNA replication protein (165 kDa protein) (ORF 1
protein) [Includes: RNA-directed RNA polymerase (EC
2.7.7.48); Helicase (EC 3.6.1.-)] - Potato virus X (PVX)
Length = 1456
Score = 87.4 bits (207), Expect = 3e-16
Identities = 55/161 (34%), Positives = 82/161 (50%), Gaps = 6/161 (3%)
Frame = +2
Query: 2 DLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNI 181
D+S +A ++ + + NDY+AFDQSQ G + E K + IP +I + IKTN
Sbjct: 1223 DMSAWALNNWNFSRPSLANDYTAFDQSQDGAMLQFEVLKAKHHCIPEEIIQAYIDIKTNA 1282
Query: 182 TSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFV-SGDDSLVSPPPPAHPD 358
G L+ MRLTGE T+D NT+ NIA ++++DI T V +GDDS + P
Sbjct: 1283 HIFLGTLSIMRLTGEGPTFDANTECNIAYTHTKFDIPAGTAQVYAGDDSALDCVPEVKHS 1342
Query: 359 WDAVSPLLSLTFKKEFVRNGL-----FCGYYLGPAGAIRAP 466
+ + L L K + FCG+ + P G ++ P
Sbjct: 1343 FHRLEDKLLLKSKPVITQQKKGSWPEFCGWLITPKGVMKDP 1383
>UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X|Rep:
158kDa replicase - Botrytis virus X
Length = 1413
Score = 87.0 bits (206), Expect = 3e-16
Identities = 51/188 (27%), Positives = 85/188 (45%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 235
+DY+ +D+SQ G + E +K +P ++D + IKT+ L MRL+GE T
Sbjct: 1148 SDYTQYDKSQDGLFLNFELRKARHFGVPQAVLDAYTAIKTDAKVFADTLKIMRLSGEGPT 1207
Query: 236 YDDNTDYNIAVIYSEYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRN 415
+D NT+ NIA + + ++ +GDD P W +S +L K R
Sbjct: 1208 FDANTECNIAYDAARFQLSDVKACYAGDDLARDRNCPERASWKYISHQFTLQAKPLVTRK 1267
Query: 416 GLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPA 595
FCG+ L G ++ P+ L D + SY +F ++LGD + +
Sbjct: 1268 PDFCGWSLTKHGIVKNPKQLWQSMQLGLKLDKLKDIVPSYSLDFHHAYALGDKVYDIFTE 1327
Query: 596 DQVIYQSA 619
+++ Y A
Sbjct: 1328 EEMAYHQA 1335
>UniRef50_Q6RBY9 Cluster: Replicase; n=2; Poplar mosaic virus|Rep:
Replicase - Poplar mosaic virus
Length = 1992
Score = 87.0 bits (206), Expect = 3e-16
Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 1/173 (0%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 235
+DY AFD SQ + E M+ L +P+ LI+ + YIKT++ S+ G MR +GE T
Sbjct: 1779 SDYEAFDASQDQYIMAFELAVMKHLRLPADLIEDYKYIKTHLGSKLGSFAIMRFSGEAST 1838
Query: 236 YDDNTDYNIAVIYSEYDIT-TQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 412
+ NT N+ + YD+ ++ V +GDD S + D L L K +F
Sbjct: 1839 FLFNTMANMLFTFMRYDMNGSEAVCFAGDDMCASKHLRVQSEHDKFLDKLKLKAKVQFTE 1898
Query: 413 NGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGD 571
FCG+ L P G + P+ + L + I +Y E + +G+
Sbjct: 1899 KPTFCGWNLCPDGIYKKPQLVLERMCIARETNNLANCIDNYAIEVAFAYKMGE 1951
>UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (156 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Plantago asiatica
mosaic potexvirus (P1AMV)
Length = 1385
Score = 87.0 bits (206), Expect = 3e-16
Identities = 61/212 (28%), Positives = 100/212 (47%), Gaps = 12/212 (5%)
Frame = +2
Query: 2 DLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNI 181
DLSR+ ++ + ND++AFDQSQ G + E K + ++P +I+ + IK +
Sbjct: 1151 DLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSP 1210
Query: 182 TSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFV-SGDDSLVSPPPPAHPD 358
G L+ MRLTGE T+D NT+ NIA ++ +DI T + +GDD ++ P P
Sbjct: 1211 KIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPS 1270
Query: 359 WDAVSPLLSLTFKKEFVRN-----GLFCGYYLGPAGAIRAPRXXXXXXXXXXDDR----- 508
+ + ++L K + FCGY + P G I+ P +
Sbjct: 1271 FALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVR 1330
Query: 509 -TLPDKIASYLSEFVVGHSLGDPFWTLLPADQ 601
+ + +A+Y + + +SLGD LL Q
Sbjct: 1331 DAITNVVANYSLDAKLAYSLGDDLQDLLSPHQ 1362
>UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|Rep:
Replicase protein - Nerine virus X
Length = 1504
Score = 86.6 bits (205), Expect = 5e-16
Identities = 58/196 (29%), Positives = 95/196 (48%), Gaps = 7/196 (3%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 235
ND++AFDQSQ G + E K + +P+ +I+ + +IK N G L MRL+GE T
Sbjct: 1296 NDFTAFDQSQDGAMLQFEVIKAKHYGVPADIIEGYLHIKMNAKIFLGTLAIMRLSGEGPT 1355
Query: 236 YDDNTDYNIAVIYSEYDITTQT-VFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFK----- 397
+D NT+ +IA ++ + + + T F +GDDS P + A+S +SLT K
Sbjct: 1356 FDANTECSIAYHHTRFHVPSNTRRFFAGDDSAQDCPAVEKSSFQAISGRMSLTSKPVSYA 1415
Query: 398 KEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPF 577
++ + FCG+ + P G I+ P + SY + + LGD
Sbjct: 1416 QKPGKFAEFCGWSITPLGVIKDPLKLYASLELACRTDNKENVAQSYALDAKHAYQLGDAL 1475
Query: 578 WTLLPADQ-VIYQSAL 622
+L +Q V++Q +
Sbjct: 1476 HDILTPEQFVMHQKTI 1491
>UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase RdRp;
n=1; Indian citrus ringspot virus|Rep: Putative
RNA-dependent RNA polymerase RdRp - Indian citrus
ringspot virus
Length = 1658
Score = 85.4 bits (202), Expect = 1e-15
Identities = 56/196 (28%), Positives = 93/196 (47%), Gaps = 7/196 (3%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 235
ND+ AFDQSQ + E K + SIP +I + ++K + G + MRL+GE T
Sbjct: 1442 NDFEAFDQSQDANMLQFELIKAKFHSIPEEIIAGYKHLKCHAHIFLGTIAIMRLSGEGPT 1501
Query: 236 YDDNTDYNIAVIYSEYDITTQTV-FVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 412
+D NT+ +IA ++ Y + +GDDS + P P + +SP LSL K + +R
Sbjct: 1502 FDANTECSIAYNHTRYFVPKGCAQLYAGDDSACAAPLSEKPSFQHISPELSLKSKAK-IR 1560
Query: 413 N------GLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDP 574
+ FCG+ + P G I+ P ++ L D +Y + + + L D
Sbjct: 1561 SQTKGDYATFCGWLITPKGFIKNPTQLYASWLLAKHNKDLQDVARNYALDLRIAYQLKDE 1620
Query: 575 FWTLLPADQVIYQSAL 622
+ LL +++ + L
Sbjct: 1621 LYELLSPEELDHHQLL 1636
>UniRef50_P28897 Cluster: RNA replication protein (150 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (150 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Strawberry mild
yellow edge-associated virus (SMYEaV)
Length = 1323
Score = 84.6 bits (200), Expect = 2e-15
Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 6/206 (2%)
Frame = +2
Query: 2 DLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNI 181
DL +A ++ + ND++AFDQSQ G + E K + +IPS +I+ + +KTN
Sbjct: 1091 DLDEWAKANWNFEGLAHSNDFTAFDQSQDGAMLQFEVIKAKFHNIPSDIINSYVELKTNA 1150
Query: 182 TSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFV-SGDDSLVSPPPPAHPD 358
G L MRL+GE T+D NT+ +IA +++Y + V +GDDS P P
Sbjct: 1151 KVFLGVLKIMRLSGEGPTFDANTECSIAYHHTKYWVEPDVAQVYAGDDSAQDRTPVPRPS 1210
Query: 359 WDAVSPLLSLTFKKEFVRN-----GLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDK 523
++ + L L K R FCG+ + P G I+ P +
Sbjct: 1211 FNKIKDRLGLVSKPLTHRQVPGDFATFCGWIITPKGVIKDPLKLYASLQLAIRRGKSHEV 1270
Query: 524 IASYLSEFVVGHSLGDPFWTLLPADQ 601
SY + + + LGD ++L D+
Sbjct: 1271 ALSYAHDAGLAYRLGDDLHSVLTFDE 1296
>UniRef50_Q85214 Cluster: Replicase; n=1; Potato virus T|Rep:
Replicase - Potato virus T
Length = 248
Score = 84.2 bits (199), Expect = 2e-15
Identities = 53/176 (30%), Positives = 81/176 (46%), Gaps = 1/176 (0%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 235
+DY AFD+SQ + LE + ++ LID + +K + + G + MR TGE GT
Sbjct: 9 SDYEAFDRSQDAIILGLEIECLKLFGWDQDLIDDYRKLKLWMGCRLGAIAIMRFTGEFGT 68
Query: 236 YDDNTDYNIAVIYSEYDITTQTVFV-SGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 412
+ NT NIA Y+IT TV +GDD S D + + L+L K +F
Sbjct: 69 FFFNTIANIAFTCLRYNITRDTVIAFAGDDMYASGKLEIRKDREDLLAHLTLKAKVQFTE 128
Query: 413 NGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFW 580
+FCG+Y+ G ++ PR + + +Y E G+ LG+ W
Sbjct: 129 KPMFCGWYIKKMGIVKEPRLVLERWLIAERKKVIDQCFINYSIEVSYGYRLGEYLW 184
>UniRef50_P15095 Cluster: RNA replication protein (186 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (186 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Narcissus mosaic
virus (NMV)
Length = 1643
Score = 84.2 bits (199), Expect = 2e-15
Identities = 59/196 (30%), Positives = 89/196 (45%), Gaps = 6/196 (3%)
Frame = +2
Query: 2 DLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNI 181
DL +F S + ND++AFDQSQ G + E K + +IP+ +I+ + YIK N
Sbjct: 1359 DLDKFIKSQWDFSRPAHTNDFTAFDQSQDGAMLQFEVIKAKFFNIPAEIIEGYIYIKLNA 1418
Query: 182 TSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFV-SGDDSLVSPPPPAHPD 358
G L MRL+GE T+D NT+ +IA + + IT T V +GDD +
Sbjct: 1419 AIFLGTLGIMRLSGEGPTFDANTECSIAYNATRFHITDDTAQVYAGDDMALDRVSIEKDS 1478
Query: 359 WDAVSPLLSLTFKKEFVRN-----GLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDK 523
++ + L LT K F + FCG+ + PAG I+ + +
Sbjct: 1479 FNRLEKQLKLTSKPMFPKQVKGDYAEFCGWVMTPAGIIKHSLKMHASIQLQKKINNIKES 1538
Query: 524 IASYLSEFVVGHSLGD 571
SY + + LGD
Sbjct: 1539 ARSYALDLRYAYKLGD 1554
>UniRef50_Q65980 Cluster: RNA replicase; n=85; Flexiviridae|Rep: RNA
replicase - Cherry virus A
Length = 2342
Score = 83.8 bits (198), Expect = 3e-15
Identities = 50/196 (25%), Positives = 92/196 (46%), Gaps = 1/196 (0%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 235
+DY A+D SQ + E K + L+ + LI+ + Y+K ++ + G L +R TGE T
Sbjct: 1422 SDYKAYDASQDSCTLAFEYKLLRYLAFSNSLIEDYLYLKMHLNCKLGNLAIIRFTGEFCT 1481
Query: 236 YDDNTDYNIAVIYSEYDI-TTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 412
+ NT N+ + +YD+ T + +GDD + P + ++ ++ SL K +F R
Sbjct: 1482 FLFNTLTNMLFTFMKYDVRKTHAICFAGDDMCANVRLPENHEYSSLLKKFSLKAKVDFTR 1541
Query: 413 NGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLP 592
+ FCG+ L G ++ P + + SY E + ++ GD + +L
Sbjct: 1542 SPTFCGWNLSRYGIVKKPELIAARLAVARQKGEVNLVLDSYFLEHLYAYNKGDHLFEILS 1601
Query: 593 ADQVIYQSALFDFFCR 640
++ + L FF +
Sbjct: 1602 EKELEHHYNLTRFFVK 1617
>UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4;
Potexvirus|Rep: Replication-associated protein - Opuntia
virus X
Length = 1555
Score = 83.0 bits (196), Expect = 6e-15
Identities = 52/161 (32%), Positives = 74/161 (45%), Gaps = 6/161 (3%)
Frame = +2
Query: 2 DLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNI 181
D+ R+A H ++ NDY+AFDQSQ G + E K IP I+ + +K +
Sbjct: 1326 DMDRWAREHWNFNRLSYANDYTAFDQSQDGAMLQFEVLKARHHCIPEEFIEGYIDLKCSS 1385
Query: 182 TSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTV-FVSGDDSLVSPPPPAHPD 358
+ G L MRLTGE T+D NT+ NIA ++ I +GDD P P
Sbjct: 1386 KTFLGILKIMRLTGEGPTFDANTECNIAFAHTMLRIPKNAAQLYAGDDCAFDISPDQKPS 1445
Query: 359 WDAVSPLLSLTFKKEFVRN-----GLFCGYYLGPAGAIRAP 466
+ + +SL K F R FCG + P G ++ P
Sbjct: 1446 FKKIETEISLKAKPSFKRQIKGEWAEFCGMLITPLGVVKDP 1486
>UniRef50_P15402 Cluster: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - White clover
mosaic virus (strain O) (WCMV)
Length = 1294
Score = 83.0 bits (196), Expect = 6e-15
Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 6/178 (3%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 235
ND++AFDQSQ G + E K + +IP +I+ + IKT+ G L+ MRL+GE T
Sbjct: 1076 NDFTAFDQSQDGSILQFEVIKAKFHNIPEDVIEGYIQIKTHAKIFLGTLSIMRLSGEGPT 1135
Query: 236 YDDNTDYNIAVIYSEYDITTQTVFV-SGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 412
+D NT+ NIA +++++I V +GDD + P ++ + L+ L K F
Sbjct: 1136 FDANTEANIAYTHTKFNIPCDAAQVYAGDDMSIDYVASVKPSFNMIEHLMKLKGKPVFNT 1195
Query: 413 N-----GLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGD 571
FCG+ + P G I+ P + + SY + + LGD
Sbjct: 1196 QTQGDFAEFCGWTISPKGIIKKPEKMNMSIELQKNINKFHEVKRSYALDHAFAYQLGD 1253
>UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Rep:
ORF1=155k - Bamboo mosaic virus
Length = 1365
Score = 82.6 bits (195), Expect = 8e-15
Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 6/160 (3%)
Frame = +2
Query: 8 SRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITS 187
S++ +H K ++ ND+ A+DQSQ G + E K +P+ LI+ + +K N
Sbjct: 1125 SKWVDTHWKFDRLAYTNDFEAYDQSQDGAMLQFEVMKARHHDLPADLIESYIELKLNAKI 1184
Query: 188 QFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTV-FVSGDDSLVSPPPPAHPDWD 364
G L MRLTGE T+D NT+ NIA ++ + I T +GDD ++ P +
Sbjct: 1185 FLGTLGIMRLTGEGPTFDANTECNIAYTHARFHIPRGTAQLYAGDDCALNCEPEERESFK 1244
Query: 365 AVSPLLSLTFKKEFVRNGL-----FCGYYLGPAGAIRAPR 469
++ +L K +R G FCG + P G ++ PR
Sbjct: 1245 PLAAQFTLKSKPVTIRQGKGSWPEFCGNIITPYGYLKHPR 1284
>UniRef50_Q993S7 Cluster: RNA-dependant RNA polymerase; n=74; Banana
mild mosaic virus|Rep: RNA-dependant RNA polymerase -
Banana mild mosaic virus
Length = 1771
Score = 82.2 bits (194), Expect = 1e-14
Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 1/173 (0%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 235
+DY AFD SQ + + E M R+++P ID + ++K N+ S+ G + MR TGE T
Sbjct: 1548 SDYEAFDASQDSQILAFEVAIMRRMNMPQEFIDDYVWLKCNLRSKLGNMAIMRFTGEAAT 1607
Query: 236 YDDNTDYNIAVIYSEYDIT-TQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 412
+ NT NI YD+ + + +GDD ++ A+ + + L L K
Sbjct: 1608 FLFNTMANIVFTIMAYDLKGDECILFAGDDMCMNTVRRANNSYTHILKNLKLKAKVGITE 1667
Query: 413 NGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGD 571
FCG+ L G + P+ ++ L + I +Y E + LGD
Sbjct: 1668 EPTFCGWRLTIHGIYKRPQLILERFMIAIENGNLENCIDNYAIECSYAYKLGD 1720
>UniRef50_Q6YI57 Cluster: Polyprotein; n=1; Sclerotinia sclerotiorum
debilitation-associated RNA virus|Rep: Polyprotein -
Sclerotinia sclerotiorum debilitation-associated RNA
virus
Length = 1700
Score = 81.8 bits (193), Expect = 1e-14
Identities = 64/190 (33%), Positives = 87/190 (45%), Gaps = 8/190 (4%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQF--GPLTCMRLTGEP 229
ND AFD SQ G V ER E L +P LID Y+ T I S G ++ MRL+GE
Sbjct: 1374 NDCEAFDASQDGAFVEFERLHAEFLGVPRELIDF--YVDTKIKSYIWRGTISVMRLSGEG 1431
Query: 230 GTYDDNTDYNIAVIYSEYDITTQTVFV-SGDD---SLVSPPPPAHPDWDAVSPLLSLTFK 397
TYD NT N+A + ++Y I + + SGDD V PA + + L F
Sbjct: 1432 PTYDFNTWANMAFMATKYSIPSVAMTAYSGDDFACDQVLSVKPAFKELECRFKLKEKRFL 1491
Query: 398 KEFVRNGL--FCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGD 571
K R FCG + P G I+ PR + T+ I +Y ++ SLGD
Sbjct: 1492 KSQGRGSYADFCGMIITPNGVIKNPRKLYLSLKSHDEIGTIDKAIVNYYNDLRTLISLGD 1551
Query: 572 PFWTLLPADQ 601
++ L A +
Sbjct: 1552 NIFSALDATE 1561
>UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root|Rep:
RNA-dependent RNA polymerase - Tulip virus X
Length = 1361
Score = 81.4 bits (192), Expect = 2e-14
Identities = 60/212 (28%), Positives = 95/212 (44%), Gaps = 12/212 (5%)
Frame = +2
Query: 2 DLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNI 181
DLSR+ +H + ND++AFDQSQ G + E K + ++P +I+ + IK
Sbjct: 1127 DLSRWVRNHWDFTKPXYANDFTAFDQSQDGAMLQFEILKAKFFNLPEWVIEGYLDIKLTP 1186
Query: 182 TSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTV-FVSGDDSLVSPPPPAHPD 358
G L MRLTGE T+D NT+ NIA ++ + I +GDD ++ P
Sbjct: 1187 QIFTGTLAIMRLTGEGPTFDANTECNIAYTHTRFHIPDHVAQLYAGDDCAIAEVCQEKPS 1246
Query: 359 WDAVSPLLSLTFKKEFVRN-----GLFCGYYLGPAGAIRAPRXXXXXXXXXXDDR----- 508
+ + ++L K + FCGY + P G I+ P R
Sbjct: 1247 FALLKNRIALQAKPAYAPQTRGAWAEFCGYLITPKGLIKDPLKLHSSLELAKALRKQGRK 1306
Query: 509 -TLPDKIASYLSEFVVGHSLGDPFWTLLPADQ 601
+ + +A+Y + + +SLGD LL +Q
Sbjct: 1307 DAITNVVANYSLDAKMAYSLGDDLQDLLSPEQ 1338
>UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic
virus|Rep: RNA replicase - Cymbidium mosaic virus
Length = 1417
Score = 81.4 bits (192), Expect = 2e-14
Identities = 61/208 (29%), Positives = 93/208 (44%), Gaps = 7/208 (3%)
Frame = +2
Query: 2 DLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNI 181
D ++F H Q+ ND++AFDQSQ + E K +IP +I+ + IK
Sbjct: 1152 DFNKFILEHWSYKQVAHTNDFTAFDQSQDAAMLQFEVIKARYFNIPEDVIEGYIQIKLTA 1211
Query: 182 TSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQ-TVFVSGDDSLVSPPPPAHPD 358
G L+ MRL+GE T+D NT+ +IA + Y I T +GDD + P
Sbjct: 1212 EIFLGTLSIMRLSGEGPTFDANTECSIAYNATRYHINEDVTQVYAGDDMAMDHVCPEKKS 1271
Query: 359 WDAVSPLLSLTFKKEFVRN-----GLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDK 523
+ A+ L LT K + + FCG+ + P G I+ P+ DK
Sbjct: 1272 FKALEKKLKLTSKPLYPKQKPGDWADFCGWTITPYGIIKNPKKLDACLQLHTQLGD-ADK 1330
Query: 524 IA-SYLSEFVVGHSLGDPFWTLLPADQV 604
+A SY + + LGD +L D++
Sbjct: 1331 VARSYALDAKYAYDLGDRIHEVLDVDEM 1358
>UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replicase -
Cherry necrotic rusty mottle virus
Length = 2038
Score = 80.6 bits (190), Expect = 3e-14
Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 1/173 (0%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 235
+DY AFD SQ + E M L++P LI+ + ++K N S+ G MR TGE GT
Sbjct: 1816 SDYEAFDSSQDANILAFEVSLMNYLNLPRDLIEDYKHLKFNTHSKLGRFAVMRFTGEAGT 1875
Query: 236 YDDNTDYNIAVIYSEYDIT-TQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 412
+ NT N+ + Y+ + +++ +GDD + D++ V ++L K ++
Sbjct: 1876 FLFNTLANMVFTFMRYETSGRESICFAGDDMCANKLLRKKGDFEHVLNRMTLKAKVQYTT 1935
Query: 413 NGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGD 571
FCG+ LG G ++ P+ + + I +Y E + LG+
Sbjct: 1936 EPTFCGWRLGSFGIVKRPQLVQERILIALEKGNFIECIDNYAIEVSYAYKLGE 1988
>UniRef50_Q0Z8V5 Cluster: ORF 1; n=1; Chenopodium mosaic virus X|Rep:
ORF 1 - Chenopodium mosaic virus X
Length = 1571
Score = 80.6 bits (190), Expect = 3e-14
Identities = 53/159 (33%), Positives = 81/159 (50%), Gaps = 6/159 (3%)
Frame = +2
Query: 2 DLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNI 181
DL++F + + ND++AFDQSQ G + E K + +IP+ +I+ + YIK N
Sbjct: 1319 DLNKFVKTKWHFNRPAHTNDFTAFDQSQDGAMLQFEVMKAKFFNIPADIIEGYIYIKLNA 1378
Query: 182 TSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFV-SGDDSLVSPPPPAHPD 358
G L MRL+GE T+D NT+ +IA + + I T V +GDD +
Sbjct: 1379 VIFLGTLGIMRLSGEGPTFDANTECSIAYNATRFHIEDDTAQVYAGDDMALDRISTEKSS 1438
Query: 359 WDAVSPLLSLTFKKEFVRN-----GLFCGYYLGPAGAIR 460
+ ++ L LT K +F R FCG+ L PAG ++
Sbjct: 1439 FAKLAHQLKLTSKPQFPRQVRGDYAEFCGWVLTPAGILK 1477
>UniRef50_Q4F978 Cluster: RNA-dependent RNA polymerase; n=19;
Flexiviridae|Rep: RNA-dependent RNA polymerase -
Hippeastrum latent virus
Length = 1971
Score = 80.2 bits (189), Expect = 4e-14
Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 1/173 (0%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 235
+DY AFD SQ V E M L +P L+ + YIKT++ S+ G MR +GE T
Sbjct: 1757 SDYEAFDASQDQYIVAFEVAVMNYLGLPRDLVRDYLYIKTHLGSKLGNFAIMRFSGEAST 1816
Query: 236 YDDNTDYNIAVIYSEYDIT-TQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 412
+ NT N+ + YDI + + +GDD S + L L K +F
Sbjct: 1817 FLFNTMANMLFTFLRYDIRGDEAICFAGDDMCASRRLRIRDEHSQFLGKLRLKAKVQFTN 1876
Query: 413 NGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGD 571
FCG+ L P G + P+ ++ L + I +Y E + +G+
Sbjct: 1877 KPTFCGWNLCPDGIYKKPQLVLERMCVAKENNNLANCIDNYAIEVAYAYRMGE 1929
>UniRef50_Q5K4J4 Cluster: RNA-directed RNA polymerase; n=154; Pepino
mosaic virus|Rep: RNA-directed RNA polymerase - Pepino
mosaic virus
Length = 1439
Score = 79.8 bits (188), Expect = 5e-14
Identities = 60/207 (28%), Positives = 91/207 (43%), Gaps = 7/207 (3%)
Frame = +2
Query: 2 DLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNI 181
DL++F + ND++AFDQSQ G + E K + +IP+ +I+ + IK N
Sbjct: 1202 DLNQFVKQGWNFNRTAQTNDFTAFDQSQDGAMLQFEVMKAKFFNIPADIIEGYINIKLNA 1261
Query: 182 TSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEY--DITTQTVFVSGDDSLVSPPPPAHP 355
G L+ MRL+GE T+D NT+ +IA + Y D T + V+ +GDD + P
Sbjct: 1262 KIFLGTLSIMRLSGEGPTFDANTECSIAYTATRYHLDSTVKQVY-AGDDMALDGVVQEKP 1320
Query: 356 DWDAVSPLLSLTFKKEFVRN-----GLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPD 520
+ + L LT K F + FCG+ P G I+ P L
Sbjct: 1321 SFKNLQNKLKLTSKTLFPKQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHT 1380
Query: 521 KIASYLSEFVVGHSLGDPFWTLLPADQ 601
SY + + +GD L D+
Sbjct: 1381 AARSYAIDMKHSYQMGDELHDYLTPDE 1407
>UniRef50_Q5L4G0 Cluster: RNA dependent RNA polymerase; n=1; Sweet
potato chlorotic fleck virus|Rep: RNA dependent RNA
polymerase - Sweet potato chlorotic fleck virus
Length = 2090
Score = 79.4 bits (187), Expect = 7e-14
Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 1/184 (0%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 235
+DY AFD SQ + E ME L +P LI+ + YIKT++ S+ G + MR +GE T
Sbjct: 1876 SDYEAFDASQDAYILAFEICLMEHLCLPRDLIEDYKYIKTHLGSKLGNFSIMRFSGEAST 1935
Query: 236 YDDNTDYNIAVIYSEYDIT-TQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 412
+ NT N+ + +YD+ ++++ +GDD + + D L L K F
Sbjct: 1936 FLFNTIANMLFTFLKYDLNGSESICFAGDDMCANRRLTLKTEHDGFLSKLKLKAKVCFTS 1995
Query: 413 NGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLP 592
+ FCG+ L G + P ++ + + +Y E + LG+ L+
Sbjct: 1996 SPTFCGWNLSFYGIYKRPELVFERLCIAKENGNFKECLDNYAIELSYAYKLGEKVLPLMD 2055
Query: 593 ADQV 604
V
Sbjct: 2056 ESAV 2059
>UniRef50_P37987 Cluster: RNA replication protein (ORF 1 protein)
[Includes: RNA-directed RNA polymerase (EC 2.7.7.48);
Helicase (EC 3.6.1.-)]; n=17; Chrysanthemum virus B|Rep:
RNA replication protein (ORF 1 protein) [Includes:
RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC
3.6.1.-)] - Chrysanthemum virus B (CVB)
Length = 260
Score = 79.4 bits (187), Expect = 7e-14
Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 1/173 (0%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 235
+DY AFD SQ V E ME L +P LI+ + +IK ++ S+ G MR +GE T
Sbjct: 45 SDYEAFDASQDQYIVAFELALMEYLGLPRDLIEDYAFIKCHLGSKLGNFAIMRFSGEAST 104
Query: 236 YDDNTDYNIAVIYSEYDI-TTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 412
+ NT N+ + Y+I ++ + +GDD S + + L L K FV
Sbjct: 105 FLFNTMANMLFTFLRYNIKDSEHICFAGDDMCASERLCIKKEHEGFLNKLKLKAKVFFVD 164
Query: 413 NGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGD 571
FCG++L P G + P+ + L + + +Y E + LG+
Sbjct: 165 KPTFCGWHLCPDGIYKKPQLVLERMCIAKEKNNLANCLDNYAIEVSYAYKLGE 217
>UniRef50_Q0VZD1 Cluster: RNA-dependent RNA polymerase; n=1; Narcissus
common latent virus|Rep: RNA-dependent RNA polymerase -
Narcissus common latent virus
Length = 1966
Score = 78.2 bits (184), Expect = 2e-13
Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 1/173 (0%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 235
+DY AFD SQ + E + M L +P LI+ + YIKT++ S+ G MR +GE T
Sbjct: 1752 SDYEAFDASQDEYIMAFELELMNFLGLPHDLIEDYKYIKTSLGSKLGNFAIMRFSGEAST 1811
Query: 236 YDDNTDYNIAVIYSEYDIT-TQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 412
+ NT N+ + Y++ + + +GDD S + L K +F
Sbjct: 1812 FLFNTLANMLFTFLRYEVKGHEFICFAGDDMCASAHLRKTEKYSKFLDKFKLKAKVQFTA 1871
Query: 413 NGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGD 571
FCG++L P G + P+ + L + I +Y E + LG+
Sbjct: 1872 KPTFCGWHLSPDGIYKKPQLVFERMCIAMELNNLSNCIDNYAIEVTFAYKLGE 1924
>UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep: Replicase
- Hosta virus X
Length = 1507
Score = 77.8 bits (183), Expect = 2e-13
Identities = 60/190 (31%), Positives = 85/190 (44%), Gaps = 8/190 (4%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 235
ND++AFDQSQ G + E K + +IP +I + IKTN G L MRLTGE T
Sbjct: 1278 NDFTAFDQSQDGAMLQFEIIKAKFHNIPEDIILGYMDIKTNAKIFLGTLAIMRLTGEGPT 1337
Query: 236 YDDNTDYNIAVIYSEYDITTQTVFV-SGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 412
+D NT+ NIA + +++ V +GDDS +S P + + L+L K +
Sbjct: 1338 FDANTECNIAYTHLRFNVPENVAQVYAGDDSALSKVCPEKDSFKQFADRLTLKSKPQVFP 1397
Query: 413 N-----GLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPD--KIASYLSEFVVGHSLGD 571
FCG + P G I+ P TL + SY + + + LGD
Sbjct: 1398 QTQGAWAEFCGLLITPRGIIKDPVKLHASWVLATKLGTLQQIKCVNSYGEDLKLSYDLGD 1457
Query: 572 PFWTLLPADQ 601
LL Q
Sbjct: 1458 HLQELLSESQ 1467
>UniRef50_O91901 Cluster: Replicase; n=76; Rupestris stem
pitting-associated virus|Rep: Replicase - Rupestris stem
pitting associated virus-1
Length = 2161
Score = 77.4 bits (182), Expect = 3e-13
Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 1/184 (0%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 235
+DY AFD SQ + E + M+ L +P LI + +IK ++ S+ G + MR TGE T
Sbjct: 1949 SDYEAFDASQDHFILAFELQIMKFLGLPEDLILDYEFIKIHLGSKLGSFSIMRFTGEAST 2008
Query: 236 YDDNTDYNIAVIYSEYDIT-TQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 412
+ NT N+ + Y++T ++++ +GDD + + + ++ L K +FV
Sbjct: 2009 FLFNTMANMLFTFLRYELTGSESIAFAGDDMCANRRLRLKTEHEGFLNMICLKAKVQFVS 2068
Query: 413 NGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLP 592
N FCG+ L G + P+ + L + I +Y E + LG+ ++
Sbjct: 2069 NPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELAIEMMT 2128
Query: 593 ADQV 604
++V
Sbjct: 2129 EEEV 2132
>UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep:
Replicase - Garlic virus A
Length = 1625
Score = 77.4 bits (182), Expect = 3e-13
Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 1/184 (0%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 235
+DY+ +DQSQ + E +K L +P ++ + +IKT+ + G L MRL+GE T
Sbjct: 1336 SDYTQYDQSQDAPFLNFELRKARHLGVPDEVLSFYKFIKTHAKTFVGNLAIMRLSGEGPT 1395
Query: 236 YDDNTDYNIAVIYSEYDITTQT-VFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 412
+D NT+ NIA + + +GDD + W L SL K
Sbjct: 1396 FDANTECNIAYDALRFRLDDNVRACYAGDDLVRDRACEERAGWVYSERLFSLKAKPLVTS 1455
Query: 413 NGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLP 592
FCG+ L P G +++P + D SY +++ + LGD + +
Sbjct: 1456 KPDFCGWRLTPHGIVKSPIQLYQSLQLALRLGKVEDVKRSYAIDYLFAYRLGDKLYDIFD 1515
Query: 593 ADQV 604
+++
Sbjct: 1516 EEEL 1519
>UniRef50_Q5GR23 Cluster: Replicase; n=1; Daphne virus S|Rep:
Replicase - Daphne virus S
Length = 2004
Score = 76.2 bits (179), Expect = 7e-13
Identities = 51/173 (29%), Positives = 76/173 (43%), Gaps = 1/173 (0%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 235
+DY AFD SQ V E ME L +P LI+ + YIKT++ S+ G MR +GE T
Sbjct: 1792 SDYEAFDASQDQYIVGFELAVMEYLGLPRDLINDYIYIKTHLGSKLGSFAIMRFSGEAST 1851
Query: 236 YDDNTDYNIAVIYSEYDI-TTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 412
+ NT N+ + Y+I + + +GDD S L L K +F
Sbjct: 1852 FLFNTMANMLFTFLRYEIHGNENICFAGDDMCASKRLQVKNIHAKFLSKLKLKAKVDFTS 1911
Query: 413 NGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGD 571
+ FCG+ L G + P+ + L + I +Y E + LG+
Sbjct: 1912 HPTFCGWNLTKYGIYKKPQLVLERLCIAKETNNLINCIDNYAIEVSYAYKLGE 1964
>UniRef50_A7TZR7 Cluster: Replicase; n=1; Coleus vein necrosis
virus|Rep: Replicase - Coleus vein necrosis virus
Length = 1977
Score = 76.2 bits (179), Expect = 7e-13
Identities = 50/173 (28%), Positives = 75/173 (43%), Gaps = 1/173 (0%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 235
+DY AFD SQ + E K ME L IP LI + YIKT++ S+ G MR +GE T
Sbjct: 1760 SDYEAFDASQDQYIMAFELKVMEYLGIPKDLIADYVYIKTHLGSKLGNFAIMRYSGEAST 1819
Query: 236 YDDNTDYNIAVIYSEYDIT-TQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 412
+ NT N+ + YD+ + + +GDD + ++ L L K FV
Sbjct: 1820 FLFNTMANMLFTFLRYDVKGNEFICFAGDDMCANTKLRKVDTHESFLSKLKLKAKVGFVN 1879
Query: 413 NGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGD 571
FCG+ L G + P+ + L I +Y E + + +
Sbjct: 1880 KPTFCGWNLCSDGIYKKPQLVLERLCIAKETNNLTSCIDNYAIEVSYAYRMSE 1932
>UniRef50_A0AAQ6 Cluster: RNA-dependent RNA polymerase; n=1; Narcissus
symptomless virus|Rep: RNA-dependent RNA polymerase -
Narcissus symptomless virus
Length = 1871
Score = 76.2 bits (179), Expect = 7e-13
Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 1/184 (0%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 235
+DY AFD SQ + E M+ L +P L++ + +IKT++ S+ G MR +GE T
Sbjct: 1660 SDYEAFDASQDHYIMAFEVAVMKYLGLPRDLVNDYIFIKTHLGSKLGSFAIMRFSGEAST 1719
Query: 236 YDDNTDYNIAVIYSEYDIT-TQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 412
+ NT N+ + +Y+IT +++ +GDD S + L L K F
Sbjct: 1720 FLFNTMSNMLFTFMKYEITGKESICFAGDDMCASKRLRLSTVHSSYLEKLRLKAKVCFTS 1779
Query: 413 NGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLP 592
FCG+ L G + P+ + L + I +Y E + +G+ L+
Sbjct: 1780 RPTFCGWSLNRLGIFKKPQLVYGRMCIAIEKNNLQNCIDNYAIEVSYAYLMGENALVLMD 1839
Query: 593 ADQV 604
+++
Sbjct: 1840 EEEI 1843
>UniRef50_Q6PLS1 Cluster: Genome polyprotein (241 kDa polyprotein)
(ORF1 polyprotein) [Contains: Putative RNA-directed RNA
polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-); Coat
protein]; n=18; Apple stem grooving virus|Rep: Genome
polyprotein (241 kDa polyprotein) (ORF1 polyprotein)
[Contains: Putative RNA-directed RNA polymerase/helicase
(EC 2.7.7.48) (EC 3.6.1.-); Coat protein] - Apple stem
grooving virus (strain Korea) (ASGV)
Length = 2105
Score = 76.2 bits (179), Expect = 7e-13
Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 4/199 (2%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 235
+DY+AFD SQ + E ++ L + + +K + + G L MR TGE T
Sbjct: 1363 SDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKLTLGCRLGSLAIMRFTGEFCT 1422
Query: 236 YDDNTDYNIAVIYSEYDITTQT--VFVSGDD--SLVSPPPPAHPDWDAVSPLLSLTFKKE 403
+ NT N+ +Y I + + +GDD SL S + SLT +E
Sbjct: 1423 FLFNTFANMLFTQLKYKIDPRKHRILFAGDDMCSLSSLKRRRGERATRLMKSFSLTAVEE 1482
Query: 404 FVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWT 583
+ +FCG+YL P G I++P+ + + L + + +YL E + + LG+ +T
Sbjct: 1483 VRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYRLGERLYT 1542
Query: 584 LLPADQVIYQSALFDFFCR 640
+L + Y + FF +
Sbjct: 1543 ILKEEDFEYHYLVIRFFVK 1561
>UniRef50_Q6UNJ1 Cluster: Replication-associated protein; n=6;
Potexvirus|Rep: Replication-associated protein -
Schlumbergera virus X
Length = 377
Score = 75.4 bits (177), Expect = 1e-12
Identities = 52/160 (32%), Positives = 74/160 (46%), Gaps = 6/160 (3%)
Frame = +2
Query: 5 LSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNIT 184
LS++A + + NDY+AFDQSQ G + E K SIP ID + +K
Sbjct: 149 LSQWALENWNFNRTSYANDYTAFDQSQDGAMLQFEILKARHHSIPDVYIDGYVELKCCSK 208
Query: 185 SQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTV-FVSGDDSLVSPPPPAHPDW 361
+ G L MRLTGE T+D NT+ NIA +++ I T +GDD P +
Sbjct: 209 TFLGVLKIMRLTGEGPTFDANTECNIAFAHTKLKIPIGTAQLYAGDDCAFDFAPEEKQSF 268
Query: 362 DAVSPLLSLTFKKEFVRN-----GLFCGYYLGPAGAIRAP 466
+ +SL K + R FCG + P G ++ P
Sbjct: 269 KKIETQISLQAKPTYKRQIKGEWAEFCGMIITPLGVMKDP 308
>UniRef50_P17965 Cluster: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=10;
Carlavirus|Rep: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Potato virus M
(strain Russian) (PVM)
Length = 1968
Score = 74.9 bits (176), Expect = 2e-12
Identities = 51/176 (28%), Positives = 82/176 (46%), Gaps = 4/176 (2%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 235
+DY AFD SQ + E + M+ L +PS LI+ + +IKT++ S+ G MR +GE T
Sbjct: 1754 SDYEAFDASQDEFIMAFELELMKYLRLPSDLIEDYKFIKTSLGSKLGNFAIMRFSGEAST 1813
Query: 236 YDDNTDYNIAVIYSEYDIT-TQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 412
+ NT N+ + Y+I + + +GDD S + L L K +FV+
Sbjct: 1814 FLFNTLANMLFTFMRYNIRGDEFICFAGDDMCASRRLQPTKKFAHFLDKLKLKAKVQFVQ 1873
Query: 413 ---NGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGD 571
FCG++L P G + P+ + L + I +Y E + LG+
Sbjct: 1874 FVNKPTFCGWHLCPDGIYKKPQLVLERMCIAKEMNNLSNCIDNYAIEVAYAYKLGE 1929
>UniRef50_A4ZWC5 Cluster: Replicase; n=2; Carlavirus|Rep: Replicase -
Phlox virus S
Length = 1990
Score = 74.5 bits (175), Expect = 2e-12
Identities = 51/173 (29%), Positives = 76/173 (43%), Gaps = 1/173 (0%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 235
+DY AFD SQ V E ME L +P LI+ + +IKT++ S+ G MR +GE T
Sbjct: 1776 SDYEAFDASQDQYMVAFEVAVMEYLGLPRDLIEDYKFIKTHLGSKLGNFAIMRFSGEAST 1835
Query: 236 YDDNTDYNIAVIYSEYDIT-TQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 412
+ NT N+ + +Y+I + + +GDD S L L K V
Sbjct: 1836 FLFNTMANMLFTFLKYEIKGHEFICFAGDDMCASERLATKHKHVGFLSKLKLKAKVFMVS 1895
Query: 413 NGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGD 571
FCG+ L P G + P+ + L + I +Y E + LG+
Sbjct: 1896 KPTFCGWNLCPDGIYKKPQLVMERMCIAKEKANLANCIDNYAIEVSYAYKLGE 1948
>UniRef50_Q9E948 Cluster: RNA polymerase; n=17; Flexiviridae|Rep: RNA
polymerase - Apple stem pitting virus
Length = 2185
Score = 73.7 bits (173), Expect = 3e-12
Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 1/191 (0%)
Frame = +2
Query: 2 DLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNI 181
DL+ + ++H K + +DY AFD SQ + E + M+ L +P LI + +IKT++
Sbjct: 1951 DLAEWVTAH-KFNGVCTESDYEAFDASQDHFILAFELEVMKFLGLPPDLIADYTFIKTHL 2009
Query: 182 TSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDIT-TQTVFVSGDDSLVSPPPPAHPD 358
S+ G MR TGE T+ NT N+ + YD+ + + +GDD +
Sbjct: 2010 GSKLGNFAIMRFTGEASTFLFNTMANMLFTFLRYDLNGKEAICFAGDDMCANSRLKVTNQ 2069
Query: 359 WDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYL 538
+ L K +F FCG+ L G + P + R L + I +Y
Sbjct: 2070 HAKFLDKIKLKAKVQFTITPTFCGWGLCEHGVFKKPDLVLERLQIARETRNLENCIDNYA 2129
Query: 539 SEFVVGHSLGD 571
E + +G+
Sbjct: 2130 IEVSCAYKMGE 2140
>UniRef50_Q52V15 Cluster: Replicase; n=17; Flexiviridae|Rep:
Replicase - Mint virus 2
Length = 500
Score = 73.7 bits (173), Expect = 3e-12
Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 1/173 (0%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 235
+DY AFD+SQ + + E + ++ P LI+ + +K + G L MR +GE GT
Sbjct: 264 SDYEAFDRSQDEKILSFEVEVLKFFLWPEELINEYVTLKLMMGCSMGDLAIMRFSGEFGT 323
Query: 236 YDDNTDYNIAVIYSEYDITTQT-VFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 412
+ NT N+ Y IT T + +GDD D++ V L L K +
Sbjct: 324 FFFNTICNMVFTCMRYCITKDTPICYAGDDMYAPGVLQVKSDYEHVLKELQLKAKVQVST 383
Query: 413 NGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGD 571
+ LFCG+ + P G ++ P D L + +Y E V G+ LG+
Sbjct: 384 SPLFCGWRMTPYGIVKDPNLLLDRWKMAKRDGKLDLCMINYALEAVYGYRLGE 436
>UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61;
Trichovirus|Rep: RNA-directed RNA polymerase - Apple
chlorotic leaf spot virus (isolate apple) (ACLSV)
Length = 1885
Score = 72.9 bits (171), Expect = 6e-12
Identities = 51/196 (26%), Positives = 84/196 (42%), Gaps = 1/196 (0%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 235
+DY+AFD SQ + E + ++ ++ + +K + + G MR TGE T
Sbjct: 1639 SDYTAFDVSQDHTILAFEVELLKHFGWDDKVLQSYIKMKCTLGCRLGGFAIMRFTGEFST 1698
Query: 236 YDDNTDYNIAVIYSEYDITTQT-VFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 412
+ NT N+ + Y++ T + +GDD + + LSL K +
Sbjct: 1699 FLFNTLANMVFTFCRYEVPDGTPICFAGDDMCALRNLREIDTHECILSKLSLKAKVNRTK 1758
Query: 413 NGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLP 592
+FCG+ L G I+ P ++ L D I SY EF + LG+ ++ L
Sbjct: 1759 VPMFCGWRLCFDGLIKEPCLIYERLQVAIENGRLMDVIDSYFLEFSFAYKLGERLYSHLE 1818
Query: 593 ADQVIYQSALFDFFCR 640
+Q+ Y L FF R
Sbjct: 1819 IEQLNYHQVLTRFFIR 1834
>UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Allexivirus|Rep: RNA replication protein (194 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Shallot virus X (ShVX)
Length = 1718
Score = 72.1 bits (169), Expect = 1e-11
Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 1/184 (0%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 235
+DY+ +DQSQ + E +K L +P ++ + +IKT+ + G L MRL+ E T
Sbjct: 1418 SDYTQYDQSQDAAFLNFEIRKARHLGVPEDVLSFYKFIKTHAKTFLGNLAIMRLSAEGPT 1477
Query: 236 YDDNTDYNIAVIYSEYDITTQT-VFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 412
+D NT+ NIA + + +GDD + W L SL K
Sbjct: 1478 FDANTECNIAYDALRFRLGDDVRASYAGDDLVRDKACEERAGWVYSESLFSLKAKPLVTN 1537
Query: 413 NGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLP 592
FCG+ L G +++P + + SY +++ + LGD + +
Sbjct: 1538 KPDFCGWRLTRHGIVKSPIQLYQSLQLALRLGKIDEVKRSYAIDYLFAYRLGDKIYDIFD 1597
Query: 593 ADQV 604
D++
Sbjct: 1598 EDEL 1601
>UniRef50_Q91BP7 Cluster: RNA polymerase; n=3; Flexiviridae|Rep: RNA
polymerase - Sugarcane striate mosaic associated virus
Length = 1937
Score = 71.3 bits (167), Expect = 2e-11
Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 1/172 (0%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 235
+DY AFD SQ + E M+ L +P+ LI+ + YIK ++ S+ G MR TGE T
Sbjct: 1721 SDYEAFDASQDHYILAFELALMKYLGLPNELIEDYKYIKIHLGSKLGDFAIMRFTGEAST 1780
Query: 236 YDDNTDYNIAVIYSEYDIT-TQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 412
+ NT N+ + YDI +++ +GDD + ++ +L K +
Sbjct: 1781 FLFNTMANMLFTFLVYDIKGNESICFAGDDMYANTSLKTCSKNKSLLKKFTLKAKVQVTE 1840
Query: 413 NGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLG 568
+ FCG++L G + P + L + + SY E +++G
Sbjct: 1841 SPTFCGWHLTEDGIYKDPILVSFRFMIALEKGILHECLESYSIECSYAYNMG 1892
>UniRef50_P22657 Cluster: RNA replication protein (152 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=20;
Carlavirus|Rep: RNA replication protein (152 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Potato virus S (strain Peruvian)
Length = 353
Score = 70.5 bits (165), Expect = 3e-11
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 1/173 (0%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 235
+DY AFD SQ V E M L +P+ LI+ + YIKT++ S+ G MR +GE T
Sbjct: 142 SDYEAFDASQDQYIVAFELALMRYLGLPNDLIEDYKYIKTHLGSKLGNFAIMRFSGEAST 201
Query: 236 YDDNTDYNIAVIYSEYDIT-TQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 412
+ NT N+ + Y + + + +GDD + + L L K +
Sbjct: 202 FLFNTMANMLFTFLRYKLKGDERICFAGDDMCANRALFIKDTHEGFLKKLKLKAKVDRTN 261
Query: 413 NGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGD 571
FCG+ L G + P+ + L + I +Y E + LG+
Sbjct: 262 RPSFCGWSLSSDGIYKKPQLVFERLCIAKETANLANCIDNYAIEVSYAYKLGE 314
>UniRef50_Q67654 Cluster: Replicase; n=5; Carlavirus|Rep: Replicase -
Garlic latent virus
Length = 1924
Score = 70.1 bits (164), Expect = 4e-11
Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 1/173 (0%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 235
+DY AFD SQ + E ME L +P LI+ + YIKT++ + G L MR +GE T
Sbjct: 1710 SDYEAFDASQDQYIMAFEIALMEFLGLPRSLINDYKYIKTHLGCKMGALAIMRFSGEAST 1769
Query: 236 YDDNTDYNIAVIYSEYDIT-TQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 412
+ NT N+ + YD+ +++ +GDD + + L L K F +
Sbjct: 1770 FLFNTLANMLFTFLRYDLNGHESICFAGDDMCANRRLRVSLKHEDFLGKLKLKAKVAFTK 1829
Query: 413 NGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGD 571
FCG+ L G + P+ + L + I +Y E + G+
Sbjct: 1830 RPTFCGWNLTFFGIYKKPQLVFERMCIAKETNNLHNCIDNYAIEISFAYVKGE 1882
>UniRef50_P22168 Cluster: RNA replication protein (152 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (152 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Foxtail mosaic
virus
Length = 1335
Score = 69.3 bits (162), Expect = 8e-11
Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 11/194 (5%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 235
ND++A+DQSQ G + E K IP +++ + +K N G L MRLTGE T
Sbjct: 1107 NDFTAYDQSQDGAMLQFEVLKALHHDIPHEVVEAYVALKLNSKMFLGTLAIMRLTGEGPT 1166
Query: 236 YDDNTDYNIAVIYSEYDITTQTV-FVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 412
+D NT+ NIA ++ ++I +GDD ++ P + + +L K +
Sbjct: 1167 FDANTECNIAYTHARFEIPKNVAQMYAGDDCALNCRPVERQSFLPLVEKFTLKSKPKVFE 1226
Query: 413 NGL-----FCGYYLGPAGAIRAPR-----XXXXXXXXXXDDRTLPDKIASYLSEFVVGHS 562
+ FCG + P G ++ P + +L D +Y + + +
Sbjct: 1227 QKVGSWPEFCGNLITPRGYLKDPMKLQHCLQLAQRKKPSEPGSLKDVAENYAMDLLPTYE 1286
Query: 563 LGDPFWTLLPADQV 604
LGD + + Q+
Sbjct: 1287 LGDALYEIFDERQM 1300
>UniRef50_Q8B3K7 Cluster: RNA-dependent RNA polymerase; n=7; Grapevine
virus A|Rep: RNA-dependent RNA polymerase - Grapevine
virus A
Length = 1707
Score = 63.3 bits (147), Expect = 5e-09
Identities = 48/191 (25%), Positives = 80/191 (41%), Gaps = 1/191 (0%)
Frame = +2
Query: 2 DLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNI 181
DL ++A + ++ + + +DY AFD+SQ + + LE + + P LI + +K +
Sbjct: 1457 DLDKWAKTWVESM-MGTDSDYEAFDRSQDEKVLDLEVEVLRFFLWPEDLIREYEELKLMM 1515
Query: 182 TSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSGDDSLVSPP-PPAHPD 358
G L MR +GE GT+ NT N+ Y + T D + SP D
Sbjct: 1516 GCALGDLAVMRFSGEFGTFFFNTICNMVFSCMRYHMDRNTPICFAGDDMYSPGILRTKND 1575
Query: 359 WDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYL 538
++ L+L K LFCG+ + P G ++ P L + +Y
Sbjct: 1576 YEGTLDQLTLKAKVHISEEPLFCGWRMSPFGIVKEPNLILDRWKIAKRSGNLSLCLVNYA 1635
Query: 539 SEFVVGHSLGD 571
E G+ L +
Sbjct: 1636 IEASFGYRLSE 1646
>UniRef50_Q1WAJ5 Cluster: 27 kDa protein; n=1; White ash mosaic
virus|Rep: 27 kDa protein - White ash mosaic virus
Length = 243
Score = 60.1 bits (139), Expect = 5e-08
Identities = 39/146 (26%), Positives = 59/146 (40%), Gaps = 1/146 (0%)
Frame = +2
Query: 170 KTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITT-QTVFVSGDDSLVSPPPP 346
K N + G L MRLTGE T+D NT+ NIA + +T + +GDD
Sbjct: 34 KCNARTFAGKLAIMRLTGEGPTFDANTECNIAYDALRFKLTKGKKACYAGDDLAREECAE 93
Query: 347 AHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKI 526
W ++P LT K FCG+ + G ++ PR + I
Sbjct: 94 ERSSWAYLNPSFKLTAKPIETTRPDFCGWRITKEGIVKQPRQLYQSLVLGFLRGNIASMI 153
Query: 527 ASYLSEFVVGHSLGDPFWTLLPADQV 604
SY +F + +GD + + D +
Sbjct: 154 PSYKIDFTYAYKMGDKLFEIFDEDDL 179
>UniRef50_Q04610 Cluster: Non-structural polyprotein; n=538; root|Rep:
Non-structural polyprotein - Hepatitis E virus (strain
Myanmar) (HEV)
Length = 1693
Score = 51.2 bits (117), Expect = 2e-05
Identities = 47/142 (33%), Positives = 66/142 (46%), Gaps = 8/142 (5%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMR-----LT 220
ND+S FD +Q+ ++ LE ME +P LI L+ I++ Q P +R +
Sbjct: 1459 NDFSEFDSTQNNFSLGLECAIMEECGMPQWLIRLYHLIRSAWILQ-APKESLRGFWKKHS 1517
Query: 221 GEPGTYDDNTDYNIAVIYSEYDITT-QTVFVSGDDSLV-SPPPPAHPDWDAVSPLLSLTF 394
GEPGT NT +N+AVI YD Q GDDS+V P + L
Sbjct: 1518 GEPGTLLWNTVWNMAVITHCYDFRDFQVAAFKGDDSIVLCSEYRQSPGAAVLIAGCGLKL 1577
Query: 395 KKEFVRNGLFCGYYLGPA-GAI 457
K +F GL+ G + P GA+
Sbjct: 1578 KVDFRPIGLYAGVVVAPGLGAL 1599
>UniRef50_Q6QLN1 Cluster: Non-structural polyprotein; n=40; root|Rep:
Non-structural polyprotein - Avian hepatitis E virus
Length = 1531
Score = 47.6 bits (108), Expect = 3e-04
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTN---ITSQFGPLTCMRL-TG 223
ND+S FD +Q+ ++ LE + M R +P ++ L+ +++ + + C + +G
Sbjct: 1300 NDFSEFDSTQNNVSLDLECELMRRFGMPDWMVALYHLVRSYWLLVAPKEALRGCWKKHSG 1359
Query: 224 EPGTYDDNTDYNIAVIYSEYDITTQTVF-VSGDDSLV 331
EPGT NT +N+ V++ Y+ +V GDDS+V
Sbjct: 1360 EPGTLLWNTVWNMTVLHHVYEFDRPSVLCFKGDDSVV 1396
>UniRef50_Q5VI74 Cluster: RNA-dependent RNA polymerase; n=1;
Fragaria chiloensis latent virus|Rep: RNA-dependent RNA
polymerase - Fragaria chiloensis latent virus
Length = 786
Score = 46.8 bits (106), Expect = 5e-04
Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 9/136 (6%)
Frame = +2
Query: 59 DYSAFDQSQHGEAVVLERKKMERLSIPSHLID--LHCYIKTNITSQFG---PLTCMRLTG 223
D+S FD+SQ +++K RL +P D +++++I+ G + R TG
Sbjct: 539 DFSKFDKSQQELHHEVQKKIFLRLGLPRDFCDTWFTSHVRSHISDPSGLRFSVNFQRRTG 598
Query: 224 EPGTYDDNTDYNIAVIYSEYDITTQTVFV---SGDDSLVSPPPPAHPDWDAVSPLLSLTF 394
+ TY NT +AV+ YD++ V + SGDDSL+ P + + L F
Sbjct: 599 DAVTYLGNTVVTLAVLSYVYDLSDPNVLMVVASGDDSLIGSYRPLDRSREHLCSTL-FNF 657
Query: 395 KKEFVRNGLF-CGYYL 439
+ +F N F C +L
Sbjct: 658 EAKFPHNQPFICSKFL 673
>UniRef50_Q0WYB5 Cluster: Nonstructural protein; n=141; Hepatitis E
virus|Rep: Nonstructural protein - Hepatitis E virus
Length = 1717
Score = 46.0 bits (104), Expect = 8e-04
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Frame = +2
Query: 56 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCM-----RLT 220
ND+S FD +Q+ ++ LE ME +P LI L+ +++ T Q P + + +
Sbjct: 1483 NDFSEFDSTQNNFSLGLECVIMEECGMPQWLIRLYHLVRSAWTLQ-APKESLKGFWKKHS 1541
Query: 221 GEPGTYDDNTDYNIAVIYSEYDITTQTVFV-SGDDSLV 331
GEPGT NT +N+A+I Y+ V GDDS+V
Sbjct: 1542 GEPGTLLWNTVWNMAIIAHCYEFRDLRVAAFKGDDSVV 1579
>UniRef50_Q91NQ3 Cluster: Polymerase P2; n=2; Prune dwarf virus|Rep:
Polymerase P2 - Prune dwarf virus
Length = 788
Score = 42.3 bits (95), Expect = 0.010
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 11/138 (7%)
Frame = +2
Query: 59 DYSAFDQSQHGEAVVLERKKMERLSIPSHLIDL----HCYIKTNITSQFG---PLTCMRL 217
D+S FD+SQ ++RK RL +P ++ HC +++I+ G + R
Sbjct: 510 DFSKFDKSQQELHHEIQRKIFLRLGVPQEFVNTWFTSHC--RSHISDASGLRFSVNYQRR 567
Query: 218 TGEPGTYDDNTDYNIAVIYSEYDITTQT---VFVSGDDSLVSPPPPAHPDWDAVSPLLSL 388
G+ TY NT +A + YD+ + V SGDDSL+ ++ + L
Sbjct: 568 AGDACTYLGNTIVTLAALCYVYDLRSSNVAMVVASGDDSLIGSYSELDRSFEHLFSTL-F 626
Query: 389 TFKKEFVRNGLF-CGYYL 439
F+ +F N F C +L
Sbjct: 627 NFEAKFPHNQPFICSKFL 644
>UniRef50_P03593 Cluster: RNA-directed RNA polymerase 2A; n=1;
Alfalfa mosaic virus (strain 425 / isolate Leiden)|Rep:
RNA-directed RNA polymerase 2A - Alfalfa mosaic virus
(strain 425 / isolate Leiden)
Length = 790
Score = 41.5 bits (93), Expect = 0.017
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 9/100 (9%)
Frame = +2
Query: 59 DYSAFDQSQHGEAVVLERKKMERLSIPSHLIDL--HCYIKTNITSQ----FGPLTCMRLT 220
D+S FD+SQ+ +++ + ++ L IP+ + L + + K+ I+ F + R T
Sbjct: 530 DFSKFDKSQNELHHLIQERFLKYLGIPNEFLTLWFNAHRKSRISDSKNGVFFNVDFQRRT 589
Query: 221 GEPGTYDDNTDYNIAVIYSEYDI---TTQTVFVSGDDSLV 331
G+ TY NT +A + YD+ + V SGDDSL+
Sbjct: 590 GDALTYLGNTIVTLACLCHVYDLMDPNVKFVVASGDDSLI 629
>UniRef50_Q6JE41 Cluster: P2 protein; n=1; Humulus japonicus latent
virus|Rep: P2 protein - Humulus japonicus latent virus
Length = 853
Score = 39.5 bits (88), Expect = 0.069
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Frame = +2
Query: 59 DYSAFDQSQHGEAVVLERKKMERLSIPSHLID------LHCYIKTNITSQFGPLTCMRLT 220
D+S FD+SQ L+R+ R+ +P + ID +I F + R T
Sbjct: 589 DFSKFDKSQGELHHYLQREIFIRIGVPMNFIDAWVPQVTRSFISDPSNGLFFNVDFQRRT 648
Query: 221 GEPGTYDDNTDYNIAVIYSEYDI---TTQTVFVSGDDSLV 331
G+ TY NT + V+ YD+ +V SGDD L+
Sbjct: 649 GDACTYLGNTLVTLCVLCHVYDLGDANVLSVVASGDDCLI 688
>UniRef50_A5JM40 Cluster: Polyprotein; n=9; Crinivirus|Rep:
Polyprotein - Cucumber yellow stunting disorder virus
Length = 2483
Score = 39.5 bits (88), Expect = 0.069
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Frame = +2
Query: 194 GPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDI-TTQTVFVSGDDSLVSPPPPAHPDWDAV 370
G L R TG P T+ NT + ++ S+Y++ + VSGDDSL+ P P+ A
Sbjct: 2299 GELGAQRRTGSPNTWLSNTLVTMGILLSQYNLDDIDLMLVSGDDSLIFSKKPL-PNVTA- 2356
Query: 371 SPLLSLTFKKEFVRNGL--FCGYYL 439
F+ +F+ N + FC Y+
Sbjct: 2357 EINKDFGFEAKFLMNSVPYFCSKYI 2381
>UniRef50_Q8JJW9 Cluster: Polyprotein; n=4; Sweet potato chlorotic
stunt virus|Rep: Polyprotein - Sweet potato chlorotic
stunt virus
Length = 2492
Score = 39.1 bits (87), Expect = 0.092
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 9/136 (6%)
Frame = +2
Query: 59 DYSAFDQSQHG-----EAVVLERKKM-ERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLT 220
D+S FD+SQ E ++ K E + + C K+ + G L R T
Sbjct: 2258 DFSKFDKSQGCVFKLYEGMIYRFLKFSEEAYLNIETTEYFCRFKS-ASGLTGELGAQRRT 2316
Query: 221 GEPGTYDDNTDYNIAVIYSEYDI-TTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFK 397
G P T+ NT + ++ + YD+ + VSGDDSL+ + ++ ++ F+
Sbjct: 2317 GSPNTWLSNTLVTMGMLLNVYDLDDIDLMLVSGDDSLIFSKKQLENKTNELN--INFGFE 2374
Query: 398 KEFVRNGL--FCGYYL 439
+F+ N + FC ++
Sbjct: 2375 AKFIENSVPYFCSKFI 2390
>UniRef50_Q6RK13 Cluster: P2 protein; n=6; Ilarvirus subgroup 1|Rep:
P2 protein - Parietaria mottle virus
Length = 805
Score = 39.1 bits (87), Expect = 0.092
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 10/137 (7%)
Frame = +2
Query: 59 DYSAFDQSQHGEAVVLERKKMERLSIPSHLID--LHCYIKTNITSQ---FG-PLTCMRLT 220
D+S FD+SQ ++ + L IP H +D + + +++I + G + R T
Sbjct: 471 DFSKFDKSQGRLHHDVQLRLFLHLGIPQHFVDTWFNAHERSHIRDRDCGIGFSVDYQRRT 530
Query: 221 GEPGTYDDNTDYNIAVIYSEYDITTQTV-FV--SGDDSLVSPPPPAHPDWDAVSPLLSLT 391
G+ TY NT ++V+ YD++ + FV SGDDSL+ P D + + L
Sbjct: 531 GDACTYLGNTLVTLSVLSYVYDLSKPDILFVAASGDDSLIGSLNPLPRDKEDLCVSL-FN 589
Query: 392 FKKEFVRNGLF-CGYYL 439
+ +F N F C +L
Sbjct: 590 LETKFPHNQPFLCSKFL 606
>UniRef50_Q7T737 Cluster: RNA-dependent RNA polymerase; n=11;
root|Rep: RNA-dependent RNA polymerase - Little cherry
virus 2
Length = 515
Score = 37.5 bits (83), Expect = 0.28
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 8/135 (5%)
Frame = +2
Query: 59 DYSAFDQSQHGEAVVLERKKMERLSIPSHLIDL-HCYIKTNITSQFGP-----LTCMRLT 220
D S FD+SQ +E + RL + +++ + ++ S F + R T
Sbjct: 280 DISKFDKSQGPLIKQIEEMVLRRLGVDEEVLNWWYSSEYESVCSTFDKSLTVSVDAQRRT 339
Query: 221 GEPGTYDDNTDYNIAVI--YSEYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTF 394
G T+ NT N+ ++ +D T F SGDDSLV P + D+ +S L
Sbjct: 340 GGSNTWLGNTIVNMVLLAYVKNFDPNTFVCF-SGDDSLVLSRDPIYFDFFKLSLELGFDV 398
Query: 395 KKEFVRNGLFCGYYL 439
K V FC Y+
Sbjct: 399 KFTPVATPYFCSKYI 413
>UniRef50_Q6JGW4 Cluster: ORF 1a/1b fusion polyprotein; n=7;
Strawberry pallidosis associated virus|Rep: ORF 1a/1b
fusion polyprotein - Strawberry pallidosis associated
virus
Length = 2451
Score = 37.1 bits (82), Expect = 0.37
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 200 LTCMRLTGEPGTYDDNTDYNIAVIYSEYDI-TTQTVFVSGDDSLV 331
L R TG P T+ NT +A+I + YD+ + VSGDDSL+
Sbjct: 2269 LGAQRRTGSPNTWLSNTLVTLAMILTHYDLDDIDLLLVSGDDSLI 2313
>UniRef50_Q9Q703 Cluster: P348; n=7; Beet yellows virus|Rep: P348 -
Beet yellows virus (BYV) (Sugar beet yellows virus)
Length = 3090
Score = 36.7 bits (81), Expect = 0.49
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 9/140 (6%)
Frame = +2
Query: 59 DYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCY--IKTNITSQFGPLTC----MRLT 220
D+S FD+SQ ER L+D+ +N T+ G L+ R +
Sbjct: 2823 DFSKFDKSQDAFIKSFERTLYSAFGFDEDLLDVWMQGEYTSNATTLDGQLSFSVDNQRKS 2882
Query: 221 GEPGTYDDNTDYNIAVIYSEYDITT-QTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFK 397
G T+ N+ + ++ Y + +FVSGDDSL+ P DA+ L F+
Sbjct: 2883 GASNTWIGNSIVTLGILSMFYYTNRFKALFVSGDDSLIFSESPIRNSADAM--CTELGFE 2940
Query: 398 KEFVRNGL--FCGYYLGPAG 451
+F+ + FC + G
Sbjct: 2941 TKFLTPSVPYFCSKFFVMTG 2960
>UniRef50_Q9DUT2 Cluster: Putative 2a protein; n=1; Pelargonium
zonate spot virus|Rep: Putative 2a protein - Pelargonium
zonate spot virus
Length = 687
Score = 36.7 bits (81), Expect = 0.49
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Frame = +2
Query: 59 DYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHC--YIKTNITSQFGPLT--C--MRLT 220
D S FD+SQ + +RK + ++ +P+HL + C + K+ I+ ++ C R T
Sbjct: 433 DLSKFDKSQGLLHLEFQRKILCKIGLPAHLANWWCDFHYKSFISDPRAKVSFNCSFQRRT 492
Query: 221 GEPGTYDDNTDYNIAVIYSEYDITT-QTVFVSGDDSLVSPPPP 346
G+ T+ NT +A+ YD + + +GDDSL P
Sbjct: 493 GDAFTFFGNTLVTMAMFSFCYDTRQFEKMLFAGDDSLAISSSP 535
>UniRef50_Q6VRA8 Cluster: ORF 1a/1b fusion polyprotein; n=14;
Crinivirus|Rep: ORF 1a/1b fusion polyprotein - Beet
pseudo-yellows virus
Length = 2441
Score = 36.7 bits (81), Expect = 0.49
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 200 LTCMRLTGEPGTYDDNTDYNIAVIYSEYDI-TTQTVFVSGDDSLV 331
L R TG P T+ NT + ++ S YD+ + VSGDDSL+
Sbjct: 2259 LGAQRRTGSPNTWLSNTLVTLGIVLSTYDLRDIDLLLVSGDDSLI 2303
>UniRef50_Q83045 Cluster: RNA-dependent RNA polymerase; n=7;
Crinivirus|Rep: RNA-dependent RNA polymerase - Lettuce
infectious yellows virus
Length = 476
Score = 35.9 bits (79), Expect = 0.86
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 200 LTCMRLTGEPGTYDDNTDYNIAVIYSEYDI-TTQTVFVSGDDSLV 331
L R TG P T+ NT + ++ S YDI + VSGDDSL+
Sbjct: 294 LGTQRRTGSPNTWLSNTLVTLGMMLSSYDIDDIDLLLVSGDDSLI 338
>UniRef50_Q86783 Cluster: RNA-directed RNA polymerase 2A; n=94;
Cucumovirus|Rep: RNA-directed RNA polymerase 2A -
Cucumber mosaic virus (strain K) (CMV)
Length = 858
Score = 35.1 bits (77), Expect = 1.5
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 10/104 (9%)
Frame = +2
Query: 59 DYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHC------YIKTNITSQFGPLTCMRLT 220
D S FD+SQ ++++ + L P+ + C YI+ P++ R T
Sbjct: 517 DLSKFDKSQGEFHLMIQEHILNGLGCPAPITKWWCDFHRFSYIRDRRAGVGMPISFQRRT 576
Query: 221 GEPGTYDDNTDYNIAVIYSEYDITT-QTVFVSGDDSL---VSPP 340
G+ TY NT +A YD + + SGDDSL V PP
Sbjct: 577 GDAFTYFGNTIVTMAEFAWCYDTDQFEKLLFSGDDSLGFSVLPP 620
>UniRef50_Q66107 Cluster: Polymerase; n=11; Ilarvirus subgroup
2|Rep: Polymerase - Citrus leaf rugose virus
Length = 832
Score = 34.7 bits (76), Expect = 2.0
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Frame = +2
Query: 59 DYSAFDQSQHGEAVVLERKKMERLSIPSHLIDL------HCYIKTNITSQFGPLTCMRLT 220
D+S FD+SQ +++ + L +P +++ YI T + R T
Sbjct: 440 DFSKFDKSQGELHHKVQKMIFDLLKLPPEFVEMWFTSHERSYITDRDTGVGFAVDFQRRT 499
Query: 221 GEPGTYDDNTDYNIAVIYSEYDITTQTV-FV--SGDDSLV 331
G+ TY NT + + YD+ + FV SGDDSL+
Sbjct: 500 GDANTYLGNTLVTLICLARVYDLCDPKITFVIASGDDSLI 539
>UniRef50_A7NVU4 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=9; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 512
Score = 34.7 bits (76), Expect = 2.0
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 134 IPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSE 280
IPS +D+ +I+ + ++GPL C L G P + D+N + E
Sbjct: 87 IPSKSLDVSSFIRKRM-KKYGPLFCTNLVGRPVVVSSDPDFNYYIFQQE 134
>UniRef50_Q997A3 Cluster: Putative polymerase p2; n=1; American plum
line pattern virus|Rep: Putative polymerase p2 -
American plum line pattern virus
Length = 740
Score = 34.3 bits (75), Expect = 2.6
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 12/103 (11%)
Frame = +2
Query: 59 DYSAFDQSQHGEAVVLERKKMERL-SIPSHLIDLHCYIKTNITSQF-------GPLT-CM 211
DYS FD+SQ ++RK RL S P + + + ++ S+ G T
Sbjct: 476 DYSKFDKSQGRLHHEIQRKLFRRLHSNPDYDNFIETWFSAHMRSKIYDRDAGVGFSTDYQ 535
Query: 212 RLTGEPGTYDDNTDYNIAVIYSEYDITTQT---VFVSGDDSLV 331
R TG+ TY NT + + YD+T+ V SGDDSL+
Sbjct: 536 RRTGDACTYLGNTLVTLCTLSYIYDLTSPNVGLVVASGDDSLI 578
>UniRef50_A4RF10 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 548
Score = 33.9 bits (74), Expect = 3.5
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 257 NIAVIYSEYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 412
N+ + ++T+T+ D+S V P A P WDA+S L S +++FV+
Sbjct: 241 NVTLGLEPASLSTETLVAQADNSFVFVAPQAAPTWDAISELES---EEDFVK 289
>UniRef50_Q61PF6 Cluster: Putative uncharacterized protein CBG07562;
n=1; Caenorhabditis briggsae|Rep: Putative
uncharacterized protein CBG07562 - Caenorhabditis
briggsae
Length = 3008
Score = 33.5 bits (73), Expect = 4.6
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 257 NIAVIYSEYDITTQTVFVSGDDSLVSPPPPAHPDW 361
NI+++ +YD +T+F G + V PPPP DW
Sbjct: 1931 NISIV-QDYDEALRTIF-GGTEQAVPPPPPVEVDW 1963
>UniRef50_A7SNG1 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella vectensis
Length = 3976
Score = 33.5 bits (73), Expect = 4.6
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 175 GFDVAMEVYKMRWNGKPLHFLPFQDNGLTMLRLV 74
G + AME K+ WN F+P++D G+++L V
Sbjct: 950 GLEKAMEKMKVEWNDMFFEFVPYRDTGVSILSAV 983
>UniRef50_Q8BEP8 Cluster: RNA-dependent RNA polymerase; n=75;
Closterovirus|Rep: RNA-dependent RNA polymerase -
Grapevine rootstock stem lesion associated virus
Length = 459
Score = 33.1 bits (72), Expect = 6.0
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Frame = +2
Query: 59 DYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLH-CYIKTNITSQF-GPLTC----MRLT 220
D+S +D+SQ E + L + L+ + C + +I + G L+ R +
Sbjct: 193 DFSKYDKSQDAFVKSFEEVMYKELGVDEELLAIWMCGERLSIANTLDGQLSFTIENQRKS 252
Query: 221 GEPGTYDDNTDYNIAVIYSEYDITT-QTVFVSGDDSLV 331
G T+ N+ + ++ YD+ + ++VSGDDSL+
Sbjct: 253 GASNTWIGNSLVTLGILSLYYDVRHFEALYVSGDDSLI 290
>UniRef50_Q9LFY6 Cluster: T7N9.5; n=2; Arabidopsis thaliana|Rep:
T7N9.5 - Arabidopsis thaliana (Mouse-ear cress)
Length = 1436
Score = 33.1 bits (72), Expect = 6.0
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 74 DQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGP 199
D+S V E K + +PSHL D HCY T T++ P
Sbjct: 883 DESSSMIFVPSEPKSTRQRKLPSHLQDFHCYNNTPTTTKTSP 924
>UniRef50_A7TSR0 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 548
Score = 33.1 bits (72), Expect = 6.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 149 IDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 247
+DLHC+IK + FGP+ + L G YD+N
Sbjct: 279 VDLHCFIKKFVN--FGPIESVYLINSNGIYDNN 309
>UniRef50_A4QTP3 Cluster: Putative uncharacterized protein; n=4;
Sordariomycetes|Rep: Putative uncharacterized protein -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 824
Score = 33.1 bits (72), Expect = 6.0
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +2
Query: 317 DDSLVSPPPPAHPDWDAVSPLLSLTFK 397
D S++ PPPPA P +++P+++ TF+
Sbjct: 514 DASMMPPPPPAQPKGPSLNPIITTTFR 540
>UniRef50_Q8Q064 Cluster: Putative uncharacterized protein; n=1;
Methanosarcina mazei|Rep: Putative uncharacterized
protein - Methanosarcina mazei (Methanosarcina frisia)
Length = 1009
Score = 33.1 bits (72), Expect = 6.0
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 230 GTYDDNTDYNIAV-IYSEYDITTQTVFVSGDDSLVSP 337
G Y NT+ V YS YD+ ++TV++ G+D+ + P
Sbjct: 133 GNYSINTESKSYVPSYSSYDVFSKTVYIEGEDNFLPP 169
>UniRef50_Q91NQ0 Cluster: Polymerase p2; n=5; Ilarvirus|Rep:
Polymerase p2 - Prunus necrotic ringspot virus
Length = 799
Score = 32.7 bits (71), Expect = 8.0
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 9/105 (8%)
Frame = +2
Query: 59 DYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGP------LTCMRLT 220
D+S FD+SQ +++ L P +D+ + GP + R T
Sbjct: 523 DFSKFDKSQQRLHHLIQFHIFTALGAPKDFLDMWFASHEISHIRDGPCGIGFSVNYQRRT 582
Query: 221 GEPGTYDDNTDYNIAVIYSEYDITTQTV-FV--SGDDSLVSPPPP 346
G+ TY NT ++ + YD+ V FV SGDDSL+ P
Sbjct: 583 GDACTYLGNTIITLSALAYMYDLLDPNVTFVIASGDDSLIGSIKP 627
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 644,831,956
Number of Sequences: 1657284
Number of extensions: 13108457
Number of successful extensions: 41804
Number of sequences better than 10.0: 92
Number of HSP's better than 10.0 without gapping: 39940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41711
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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