Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n18
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    29   0.78 
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    28   1.0  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   4.2  
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc...    26   4.2  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    26   5.5  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   7.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   7.3  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   9.6  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
 Frame = +2

Query: 140  SHLIDLHCYIKTNITSQFGPLTCMRL-TGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSG 316
            S  +D+   I+  + S   PLT +   TG+ G    N    I   Y  Y ++T     + 
Sbjct: 1666 SSSMDMRFIIELLLGSDDSPLTLVGTGTGKSGKLVCNLYKTILKHYVHYGLSTSVPLYTS 1725

Query: 317  DD--SLVS----PPPPAHPDWDAVSPLLSLTFKKE 403
             +  +L+S     PPP H ++D  + +++L F+KE
Sbjct: 1726 LEKHNLISRSPSSPPPIHTNFDTNADIITL-FEKE 1759


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 21/89 (23%), Positives = 33/89 (37%)
 Frame = +2

Query: 104 LERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEY 283
           L R+    LS  + +      I+ +    +    C  +   P T DD+ +Y       EY
Sbjct: 382 LARRVSSPLSALNQMSQSPIPIRVSSDKDYDSYACHEVVSNPSTLDDDYNYMFVCPPEEY 441

Query: 284 DITTQTVFVSGDDSLVSPPPPAHPDWDAV 370
             +T  V     D L S P P     ++V
Sbjct: 442 TYSTDNVRTDSLD-LQSLPTPTLEQLESV 469


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 172 FDVAMEVYKMRWNGKPL-HFLPFQDN 98
           F VAME+ K+R +GK L   L + DN
Sbjct: 358 FAVAMEIIKLRLSGKSLASILAYDDN 383


>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
           L2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 318

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 653 PWNIHGKRNQKARSGKSLD-LLARESRKGRRE 561
           PW +  K   K R GK+++ LL R+  +G+ +
Sbjct: 286 PWGVLAKGGYKTRRGKNVNKLLVRDRPRGKEK 317


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +2

Query: 2   DLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLH 160
           D  +  SS+   + IH  N++     S+H E   L   K   +S+P   ++LH
Sbjct: 196 DTKKVKSSNRNFVTIHELNEHLKNVNSKHSEIDDLLPDKRSIVSLPPSTLNLH 248


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
 Frame = -3

Query: 353 GEQEVEVILKNHHLRQRQFAW*-CRTRCK*RQYCNPCCRHKCRARR*GACRSKVQIDL*C 177
           G++++  +LK H  +        C   C     C   C++KC     G C   + I   C
Sbjct: 452 GKEDISFLLKGHERKSCSDPIPTCENICGKLLSCGHRCKYKCHLGSCGTCSETLTIPCRC 511


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 308 VSGDDSLVSPPPPAHPDWDAVSPLLSL 388
           VS  +S+VSPPP   P   A +P  SL
Sbjct: 158 VSAPNSMVSPPPSFQPP-SAAAPATSL 183


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 305 RQFAW*CRTRCK*RQYCNPCCRHK 234
           RQFA  CR RC+  +YC+  C+H+
Sbjct: 493 RQFAK-CR-RCRRTKYCSKECQHQ 514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,614,644
Number of Sequences: 5004
Number of extensions: 51559
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)