Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10n18
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1024 - 25449163-25449824,25451882-25452191 29 2.5
06_01_0087 + 695443-695655,696669-696983 29 2.5
09_06_0142 - 21107878-21109104 29 3.3
12_02_1252 - 27346314-27347327 29 4.3
11_03_0066 + 9529969-9530166,9530271-9530450,9530559-9531287,953... 29 4.3
01_01_0187 + 1624159-1624279,1624530-1624590,1625118-1625574 28 7.5
09_06_0245 - 21833622-21833901,21833988-21834059,21834152-218342... 27 9.9
06_03_1503 - 30621089-30621170,30621258-30621438,30621462-306215... 27 9.9
02_05_0225 + 26951993-26952165,26953169-26953567,26953644-269537... 27 9.9
>12_02_1024 - 25449163-25449824,25451882-25452191
Length = 323
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = +2
Query: 230 GTYDDNTDYNIA---VIYSEYDITTQTVF--VSGDDSLVSPPPPAHP 355
GT+D D +A V Y + +T F +G+D L PPPPA P
Sbjct: 186 GTFDTALDAALAYDAVSRRLYGLNAKTNFPAAAGEDDLPPPPPPAKP 232
>06_01_0087 + 695443-695655,696669-696983
Length = 175
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Frame = +2
Query: 317 DDSLVSPPPPAH---PDWDAVSPL 379
DD L PPPPA DW+A +PL
Sbjct: 26 DDELPPPPPPASGSGEDWEATTPL 49
>09_06_0142 - 21107878-21109104
Length = 408
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 167 IKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIA 265
I + FG L C+ + GEPG Y T + +A
Sbjct: 259 INRALERHFGDLPCVEVIGEPGRYFAETAFTLA 291
>12_02_1252 - 27346314-27347327
Length = 337
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -3
Query: 155 GL*DEMEWKAAPFSSVPRQRPHHAEIGQTQSSHCRHEFVMVSDGTK 18
GL DEM W P+S+ HA + +H + + DG K
Sbjct: 261 GLADEMTWPQPPYSAFREDSFGHAVLDIKNRTHAYYAWYRNDDGAK 306
>11_03_0066 +
9529969-9530166,9530271-9530450,9530559-9531287,
9531554-9531706,9531803-9532238,9532322-9532501,
9532643-9532889,9533090-9533123,9533385-9533489,
9533833-9533967,9534220-9534399,9534504-9534626
Length = 899
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -1
Query: 169 DVAMEVYKMRWNGK 128
D+AMEVYK+ WNG+
Sbjct: 689 DIAMEVYKIVWNGQ 702
>01_01_0187 + 1624159-1624279,1624530-1624590,1625118-1625574
Length = 212
Score = 27.9 bits (59), Expect = 7.5
Identities = 25/88 (28%), Positives = 34/88 (38%)
Frame = +2
Query: 89 GEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAV 268
G+ + R RLS P H Y+ T P + + P TY +
Sbjct: 91 GDPCIPLRPVQPRLS-PPQPPPYHHYLYTTTA----PPSALHPMSYPATYPAPPRHQQPA 145
Query: 269 IYSEYDITTQTVFVSGDDSLVSPPPPAH 352
+Y I VS D+LV+PPPP H
Sbjct: 146 AVGDYVIGHA---VSAGDALVAPPPPPH 170
>09_06_0245 -
21833622-21833901,21833988-21834059,21834152-21834231,
21834366-21835109,21835212-21835547
Length = 503
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 332 SPPPPAHPDWDAV 370
+PPPPAHPD A+
Sbjct: 91 APPPPAHPDQPAI 103
>06_03_1503 -
30621089-30621170,30621258-30621438,30621462-30621510,
30621777-30621842,30621976-30622014,30622414-30622779,
30623290-30623448,30623805-30623993,30624877-30625168,
30626251-30626597,30627239-30627433,30627518-30627798,
30629525-30629690
Length = 803
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = -1
Query: 295 RGDVVLAVNDGNIVIRVVVISAGLAGKAHAGQRSKLTCNVGFDVAMEVYKMRW 137
+G V + + DG++ V+ +AG + ++ T GFD + V + +W
Sbjct: 454 KGRVFVMLEDGHLAAAVLQDEGIMAGGRRCSESARRTVLGGFDASNYVTERKW 506
>02_05_0225 + 26951993-26952165,26953169-26953567,26953644-26953797,
26954069-26954240,26954494-26954567,26954667-26954763,
26954888-26955000,26955168-26955283,26955960-26956017,
26956512-26956664,26957377-26957460,26957579-26957734,
26958401-26958469,26959212-26959300,26959398-26959560,
26959740-26959874,26959950-26960055,26960143-26960237,
26960508-26960753,26961567-26961635,26961772-26961837,
26961838-26961983,26962348-26962449,26962752-26962899,
26964183-26964239,26964315-26964445,26964535-26964623,
26964694-26965007,26965084-26965176,26966504-26966578,
26966834-26966895,26967254-26967356,26967518-26967676,
26967790-26967930,26967981-26968084,26968146-26968260,
26969017-26969169,26969256-26969417
Length = 1646
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 157 EVYKMRWNGKPLHFLPFQDNGLTM 86
E+Y M G+PL + PF DN M
Sbjct: 1438 ELYDMNLKGRPLAYTPFCDNNKEM 1461
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,896,421
Number of Sequences: 37544
Number of extensions: 387677
Number of successful extensions: 1373
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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