Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n18
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)                     33   0.15 
SB_55059| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=0)               29   3.3  
SB_47868| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_46995| Best HMM Match : KIP1 (HMM E-Value=3.1)                      28   5.8  
SB_31430| Best HMM Match : Exo70 (HMM E-Value=2)                       28   7.7  
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)                     28   7.7  

>SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)
          Length = 1047

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 175 GFDVAMEVYKMRWNGKPLHFLPFQDNGLTMLRLV 74
           G + AME  K+ WN     F+P++D G+++L  V
Sbjct: 795 GLEKAMEKMKVEWNDMFFEFVPYRDTGVSILSAV 828


>SB_55059| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=0)
          Length = 635

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 179 ITSQFGPLTCMRLTGEPGTYDDNTDYNIAV-IYSEYDITTQTV 304
           +   F P + +R+  EPG Y  ++ + +AV +YS  ++ + +V
Sbjct: 437 LEEHFPPSSGVRIIAEPGRYYSSSSFTLAVNVYSRREVQSSSV 479


>SB_47868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 302 VFVSGDDSLVSPPPPAHPDWDAVSPLLSL 388
           ++++  D L SPPPP  P +D + PL +L
Sbjct: 10  LYINSRDELSSPPPPPEPMYD-LGPLAAL 37


>SB_46995| Best HMM Match : KIP1 (HMM E-Value=3.1)
          Length = 308

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -1

Query: 208 AGQRSKLTCNVGFDVAMEVYKMRWNGKPLHFLPFQDNGLTMLRLV 74
           +G   KL      + AM+     WNG    F+ ++D G+++L  V
Sbjct: 117 SGPLLKLNAEEIEEEAMDKMHQEWNGMEFAFVEYKDTGISILSAV 161


>SB_31430| Best HMM Match : Exo70 (HMM E-Value=2)
          Length = 853

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 515 PDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSK 652
           P  +   L++  V H   D F T + +DQ  Y+  LFD  CR   K
Sbjct: 729 PKSLLDRLTDIYV-HLNTDEFATAVASDQRSYRKELFDDACRHLHK 773


>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
          Length = 193

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +1

Query: 229 RHL*RQHGLQYCRH--LQRVRHHH 294
           RH+ RQH  Q+ RH   Q  RHHH
Sbjct: 90  RHIHRQHHHQHYRHHRHQHYRHHH 113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,483,507
Number of Sequences: 59808
Number of extensions: 428974
Number of successful extensions: 1315
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)