Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n18
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132949-35|CAI70419.1|  466|Caenorhabditis elegans Hypothetical...    28   5.1  
AL132949-34|CAB61101.3|  574|Caenorhabditis elegans Hypothetical...    28   5.1  
U23523-6|AAC46561.1|   86|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AC024751-3|AAK21513.2|  440|Caenorhabditis elegans Hypothetical ...    28   6.7  
Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AL132949-35|CAI70419.1|  466|Caenorhabditis elegans Hypothetical
           protein Y53F4B.27b protein.
          Length = 466

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 641 HGKRNQKARSGKSLDLLARESRKGRRESGLQQ 546
           H K  QKARS  +L+ LA++++K + E   Q+
Sbjct: 97  HSKTRQKARSSVTLEKLAQKNQKMKEELKKQE 128


>AL132949-34|CAB61101.3|  574|Caenorhabditis elegans Hypothetical
           protein Y53F4B.27a protein.
          Length = 574

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 641 HGKRNQKARSGKSLDLLARESRKGRRESGLQQ 546
           H K  QKARS  +L+ LA++++K + E   Q+
Sbjct: 205 HSKTRQKARSSVTLEKLAQKNQKMKEELKKQE 236


>U23523-6|AAC46561.1|   86|Caenorhabditis elegans Hypothetical
           protein F53A9.6 protein.
          Length = 86

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
 Frame = +1

Query: 133 HSISSYRPPLLHQNQ---HYKSIWTFDLHAPYRRARHL*RQHGLQYCRHLQRVRHHHAN 300
           H    Y PP +H +    H+  + T   H  +    H    HG  Y  H +   HHH +
Sbjct: 25  HGAPGYMPPTVHVHTDGGHHGHMDTHHHHDSHHHGGHHGGHHGGHYESHYES-HHHHGH 82


>AC024751-3|AAK21513.2|  440|Caenorhabditis elegans Hypothetical
           protein Y18H1A.10 protein.
          Length = 440

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = -1

Query: 157 EVYKMRWNGKP--LHFLPFQDNG 95
           EV+   WNG+P  +  LPF++NG
Sbjct: 118 EVFSTVWNGRPVAIKVLPFENNG 140


>Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical
           protein C27A7.4 protein.
          Length = 1403

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 11  RFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIP 139
           R +    KP +I V +D S  D+S  G    L  ++ E+ ++P
Sbjct: 144 RLSYDKFKPSKISVTDDDSGVDESPFGSKESLAERRDEKSTVP 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,806,815
Number of Sequences: 27780
Number of extensions: 311988
Number of successful extensions: 944
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)