Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10n18
(658 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g20980.1 68416.m02653 hypothetical protein 30 1.6
At1g66235.1 68414.m07518 expressed protein ; expression supporte... 29 2.7
At1g32500.1 68414.m04010 ATP-binding-cassette transporter, putat... 29 2.7
At3g50010.1 68416.m05468 DC1 domain-containing protein contains ... 28 4.8
At1g12020.1 68414.m01388 expressed protein 28 4.8
At5g13910.1 68418.m01627 AP2/EREBP-like transcription factor LEA... 28 6.3
At4g37360.1 68417.m05291 cytochrome P450 family protein cytochro... 28 6.3
At1g07520.1 68414.m00805 scarecrow transcription factor family p... 28 6.3
At5g42990.1 68418.m05243 ubiquitin-conjugating enzyme 18 (UBC18)... 27 8.3
At4g04970.1 68417.m00722 callose synthase, putative / 1,3-beta-g... 27 8.3
>At3g20980.1 68416.m02653 hypothetical protein
Length = 405
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -1
Query: 292 GDVVLAVNDGNIVIRVVVISAGLAGKAHAGQRSKLTCNVGFDVAME 155
GDV N+GN I+ V+ G+ G A + + K GF+V+ME
Sbjct: 316 GDVTFITNEGNKTIKNVLYVPGIEGNALSVSQLKRN---GFEVSME 358
>At1g66235.1 68414.m07518 expressed protein ; expression supported
by MPSS
Length = 265
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 100 CLGTEENGAAFHSISSYRPPLLHQNQHYKSIWTFD 204
C +GA+ I + +L Q++H+KS W FD
Sbjct: 63 CENRRSSGASSDDIFNQAKEMLMQDKHFKSGWKFD 97
>At1g32500.1 68414.m04010 ATP-binding-cassette transporter, putative
similar to ATP-binding-cassette transporter (ABC1)
described in PMID:11156608
Length = 475
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 512 LPDKIASYLSEFVVGHSLGDPFWTL 586
LPD++ + +SEF+ GD FW++
Sbjct: 157 LPDELTNRISEFIGNFDSGDLFWSI 181
>At3g50010.1 68416.m05468 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 769
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -3
Query: 359 NRGEQEVEVILKNHHLRQRQFAW*CRTRCK*RQY--CN--PCCRHKC 231
N+ EV V+ NHH+ R F + C+ RC + + CN C C
Sbjct: 710 NKYGAEVSVLPNNHHM-SRPFCFICKKRCPHKTFFQCNGFEYCSRSC 755
>At1g12020.1 68414.m01388 expressed protein
Length = 226
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -3
Query: 647 NIHGKRNQKARSGKSLDLLARES 579
N+ GK++++ RSGKS LLA S
Sbjct: 127 NVTGKKDRRKRSGKSSSLLASSS 149
>At5g13910.1 68418.m01627 AP2/EREBP-like transcription factor LEAFY
PETIOLE, putative nearly identical to AP2/EREBP-like
transcription factor LEAFY PETIOLE [Arabidopsis
thaliana] GI:6942018
Length = 211
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 269 IYSEYDITTQ-TVFVSGDDSLVSPPPPAHPDWDAVSPLL 382
+YS+ ++ T VS DD PPPPA P D V ++
Sbjct: 76 VYSDMPPSSSVTSIVSPDDPPPPPPPPAPPSNDPVDYMM 114
>At4g37360.1 68417.m05291 cytochrome P450 family protein cytochrome
P450 monooxygenase, Arabidopsis thaliana, PID:d1029478
Length = 499
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = -1
Query: 634 KEIKKRALVNHLICWQES-PERVAERV 557
KE K+ +V+HL+C QE+ PE +R+
Sbjct: 263 KEKKENTMVDHLLCLQETQPEYYMDRI 289
>At1g07520.1 68414.m00805 scarecrow transcription factor family
protein similar to GB:AAD24412 from [Arabidopsis
thaliana] (Plant J. 18 (1), 111-119 (1999)); contains
Pfam profile: PF03514 GRAS family transcription factor
Length = 695
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +2
Query: 533 YLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKE 655
+LS V G S PF+T + + + SALFD F SKE
Sbjct: 557 FLSSTVNG-SFNAPFFTTRFKEALFHYSALFDLFGATLSKE 596
>At5g42990.1 68418.m05243 ubiquitin-conjugating enzyme 18 (UBC18)
E2; identical to gi:2801448
Length = 161
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 209 MRLTGEPGTYDDNTDYNIAVIYSE-YDI-TTQTVFVSGDDSLVSPPPPAHP 355
+ +TG PGT N YN+ V + + Y + Q +FV PP P HP
Sbjct: 48 IEVTGAPGTLYANETYNLQVEFPQHYPMEAPQVIFV--------PPAPLHP 90
>At4g04970.1 68417.m00722 callose synthase, putative /
1,3-beta-glucan synthase, putative similar to callose
synthase 1 catalytic subunit GI:13649388 from
[Arabidopsis thaliana]
Length = 1768
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 338 PPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAP 466
PPP HP D + P + F+K+ +RN +LG + +P
Sbjct: 102 PPPRHP--DGLDPTVLRRFRKKLLRNYTNWCSFLGVRCHVTSP 142
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,083,526
Number of Sequences: 28952
Number of extensions: 294100
Number of successful extensions: 965
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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