Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10n17
(739 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q2F6A5 Cluster: Elongation protein 4-like protein; n=1;... 451 e-126
UniRef50_A7S8W5 Cluster: Predicted protein; n=1; Nematostella ve... 144 3e-33
UniRef50_UPI0000519EA2 Cluster: PREDICTED: similar to elongation... 140 4e-32
UniRef50_UPI0000D555B9 Cluster: PREDICTED: similar to elongation... 132 7e-30
UniRef50_Q17D33 Cluster: Pax neighbour protein; n=2; Culicidae|R... 130 5e-29
UniRef50_A2IDB3 Cluster: Elongation protein 4 homolog; n=11; Eut... 121 2e-26
UniRef50_Q96EB1 Cluster: Elongator complex protein 4; n=28; Eute... 121 2e-26
UniRef50_Q9VMQ7 Cluster: Putative elongator complex protein 4; n... 103 5e-21
UniRef50_Q5DBL9 Cluster: SJCHGC00647 protein; n=3; Schistosoma j... 96 7e-19
UniRef50_Q54XS0 Cluster: RNA polymerase II elongator complex sub... 85 1e-15
UniRef50_Q18195 Cluster: Putative elongator complex protein 4; n... 72 1e-11
UniRef50_Q4W0V9 Cluster: Elongator component; n=5; Magnoliophyta... 71 2e-11
UniRef50_Q8W4Q0 Cluster: AT3g11220/F11B9_116; n=1; Arabidopsis t... 69 1e-10
UniRef50_Q9USP1 Cluster: RNA polymerase II elongator complex sub... 66 6e-10
UniRef50_Q1EPK3 Cluster: Paxneb-related protein; n=1; Musa acumi... 65 1e-09
UniRef50_A1DE76 Cluster: PAXNEB protein superfamily; n=5; Pezizo... 64 3e-09
UniRef50_Q2UE77 Cluster: RNA polymerase II elongator complex; n=... 64 5e-09
UniRef50_A4RHK2 Cluster: Putative uncharacterized protein; n=3; ... 60 7e-08
UniRef50_A2YFG1 Cluster: Putative uncharacterized protein; n=3; ... 54 4e-06
UniRef50_Q55JE8 Cluster: Putative uncharacterized protein; n=2; ... 52 2e-05
UniRef50_Q0W4S2 Cluster: Putative uncharacterized protein; n=1; ... 51 3e-05
UniRef50_Q6C0T6 Cluster: Similar to tr|Q02884 Saccharomyces cere... 50 8e-05
UniRef50_UPI000023D6AB Cluster: hypothetical protein FG04274.1; ... 49 1e-04
UniRef50_Q4PGP1 Cluster: Putative uncharacterized protein; n=1; ... 44 0.003
UniRef50_A4G1Y6 Cluster: Putative uncharacterized protein; n=1; ... 44 0.005
UniRef50_Q5JES3 Cluster: ATPase, RecA superfamily; n=1; Thermoco... 42 0.012
UniRef50_O29896 Cluster: Putative uncharacterized protein; n=1; ... 41 0.036
UniRef50_O29732 Cluster: Putative uncharacterized protein; n=1; ... 40 0.048
UniRef50_UPI00006CB1E6 Cluster: hypothetical protein TTHERM_0030... 38 0.26
UniRef50_Q8D8I8 Cluster: RecA/RadA recombinase; n=4; Vibrio|Rep:... 37 0.45
UniRef50_A0GFK5 Cluster: RAD55; n=2; Burkholderia|Rep: RAD55 - B... 37 0.45
UniRef50_A4SAZ1 Cluster: Predicted protein; n=2; Ostreococcus|Re... 37 0.59
UniRef50_Q12XV7 Cluster: KaiC; n=1; Methanococcoides burtonii DS... 37 0.59
UniRef50_Q6LUG7 Cluster: DNA repair protein radA; n=7; Proteobac... 36 1.0
UniRef50_Q2IEE4 Cluster: Protein recA; n=1; Anaeromyxobacter deh... 36 1.4
UniRef50_Q02884 Cluster: Elongator complex protein 4; n=2; Sacch... 35 2.4
UniRef50_A0E5J0 Cluster: Chromosome undetermined scaffold_8, who... 34 3.2
UniRef50_Q6CLZ1 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 34 3.2
UniRef50_UPI0000E0F49C Cluster: hypothetical 5-formyltetrahydrof... 34 4.2
UniRef50_Q81QK6 Cluster: Protoporphyrinogen oxidase; n=16; Bacil... 34 4.2
UniRef50_Q17CU0 Cluster: Putative uncharacterized protein; n=1; ... 34 4.2
UniRef50_Q64C90 Cluster: Predicted ATP-dependent serine protease... 34 4.2
UniRef50_A2SRJ6 Cluster: RecA-superfamily ATPase implicated in s... 34 4.2
UniRef50_Q0RBD5 Cluster: Putative uncharacterized protein; n=1; ... 33 5.5
UniRef50_Q08XB9 Cluster: KaiC domain protein; n=1; Stigmatella a... 33 5.5
UniRef50_Q5A2U1 Cluster: Putative uncharacterized protein RAD57;... 33 5.5
UniRef50_Q8TQM7 Cluster: Putative uncharacterized protein; n=1; ... 33 5.5
UniRef50_Q9RVC4 Cluster: DNA repair protein radA; n=4; Deinococc... 33 7.3
UniRef50_A1WPH7 Cluster: Tfp pilus assembly protein tip-associat... 33 7.3
UniRef50_A2QYI6 Cluster: Similarity: Most weak blast hits are ca... 33 7.3
UniRef50_A2BKD6 Cluster: Universally conserved protein; n=1; Hyp... 33 7.3
UniRef50_P38450 Cluster: Uncharacterized mitochondrial protein y... 33 7.3
UniRef50_Q5XDA1 Cluster: Putative uncharacterized protein; n=12;... 33 9.7
UniRef50_Q2ZYJ0 Cluster: Putative uncharacterized protein; n=1; ... 33 9.7
UniRef50_Q11IP6 Cluster: Phosphate transporter; n=21; Alphaprote... 33 9.7
UniRef50_Q338Y6 Cluster: Expressed protein; n=9; Magnoliophyta|R... 33 9.7
UniRef50_Q8ZXQ7 Cluster: Putative uncharacterized protein PAE115... 33 9.7
UniRef50_Q58527 Cluster: Uncharacterized protein MJ1127; n=6; Me... 33 9.7
>UniRef50_Q2F6A5 Cluster: Elongation protein 4-like protein; n=1;
Bombyx mori|Rep: Elongation protein 4-like protein -
Bombyx mori (Silk moth)
Length = 369
Score = 451 bits (1111), Expect = e-126
Identities = 213/215 (99%), Positives = 213/215 (99%)
Frame = +3
Query: 93 MRSFRKFIDISTHINGTKVKNNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKV 272
MRSFRKFIDISTHINGTKVKNNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKV
Sbjct: 1 MRSFRKFIDISTHINGTKVKNNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKV 60
Query: 273 LFKYFIAEGVACDHELFVTSLDEDPHKITSELPQPCALPPEDEKALSTDAEKMKIAWRYE 452
LFKYFIAEGVACDHELFVTSLDEDPHKITSELPQPCALPPEDEKA STDAEKMKIAWRYE
Sbjct: 61 LFKYFIAEGVACDHELFVTSLDEDPHKITSELPQPCALPPEDEKAPSTDAEKMKIAWRYE 120
Query: 453 GLSQVESSFGSNTNFGHNFDLSRYIDADTIEKSKIQYGTTTWQDSTLSWQTTMRRGKLKS 632
GLSQVESSFGSNTN GHNFDLSRYIDADTIEKSKIQYGTTTWQDSTLSWQTTMRRGKLKS
Sbjct: 121 GLSQVESSFGSNTNLGHNFDLSRYIDADTIEKSKIQYGTTTWQDSTLSWQTTMRRGKLKS 180
Query: 633 ALFHKLLRNIYETVLRSSGTNMLRLAIHSLGSPIW 737
ALFHKLLRNIYETVLRSSGTNMLRLAIHSLGSPIW
Sbjct: 181 ALFHKLLRNIYETVLRSSGTNMLRLAIHSLGSPIW 215
>UniRef50_A7S8W5 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 275
Score = 144 bits (348), Expect = 3e-33
Identities = 84/211 (39%), Positives = 122/211 (57%), Gaps = 9/211 (4%)
Frame = +3
Query: 132 INGTK--VKNNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVA 305
I GT+ + NN VS+GIPSLD ++GGGI G++ +VEED+ G Y++ L KYF+AEG+
Sbjct: 17 IPGTRPSIHNNQLLVSTGIPSLDSVIGGGIAVGTVLLVEEDIYGSYARQLLKYFLAEGIV 76
Query: 306 CDHELFVTSLDEDPHKITSELPQPCALPPEDEKALST---DAEKMKIAWRYEGLSQVESS 476
H LF+ S + +P I +LP P + E LST E MKIAWRY+ L +V+SS
Sbjct: 77 SGHSLFLASAELEPSAILKDLPYPMNEEDDSEPGLSTPGRQEESMKIAWRYQQLPKVQSS 136
Query: 477 FGSNTNFGHNFDLSRYIDADTIEKSKIQYGTTTWQDSTLSWQTTMRR---GKLKSALFHK 647
+NF H FDL+R + + + I TT+ D+T W ++ KL S+L
Sbjct: 137 LAC-SNFSHYFDLTRVMKEPRVHRLPI----TTF-DATSEWSEGIQNPLYEKLISSLKQT 190
Query: 648 LLRNIYETV-LRSSGTNMLRLAIHSLGSPIW 737
+ + Y T + ++LRLA+H LGS +W
Sbjct: 191 ICQGGYSTTHKQQQQKSILRLALHGLGSQLW 221
>UniRef50_UPI0000519EA2 Cluster: PREDICTED: similar to elongation
protein 4 homolog; n=2; Apocrita|Rep: PREDICTED: similar
to elongation protein 4 homolog - Apis mellifera
Length = 364
Score = 140 bits (338), Expect = 4e-32
Identities = 78/208 (37%), Positives = 120/208 (57%), Gaps = 6/208 (2%)
Frame = +3
Query: 132 INGTK--VKNNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVA 305
I+GTK +KN+ VSSGIPSLD+I+GGG+P GS+F++EED G+Y+KV+ +YF+AEGV
Sbjct: 14 ISGTKPSLKNSQLLVSSGIPSLDYIIGGGLPIGSLFLIEEDRYGIYAKVMLQYFMAEGVV 73
Query: 306 CDHELFVTSLDEDPHKITSELPQPCALPPEDEKALSTDAEKMKIAWRYEGLSQVESSFGS 485
L + S D + SE+P P ++ ++D E+MKIAWRY+ + ++ S
Sbjct: 74 TAQPLLIGSKDIKTSHLVSEMPAVITDPKSIDEPSNSD-EQMKIAWRYQNMKAIDPSPIG 132
Query: 486 NTNFGHNFDLSRYIDADTIEKSKIQYGTTTWQDSTLSWQTTMRRG----KLKSALFHKLL 653
FGH +DL++ ++ + IEK+ I T W D + + + L + L
Sbjct: 133 GQFFGHFYDLTKTMEKEVIEKADI----TQWYDDSCPVKDKIFNNTTYTNLLKCIQETLK 188
Query: 654 RNIYETVLRSSGTNMLRLAIHSLGSPIW 737
+ Y + +LR+AIHSLGS +W
Sbjct: 189 KGQYSLLETPEKRQVLRIAIHSLGSRLW 216
>UniRef50_UPI0000D555B9 Cluster: PREDICTED: similar to elongation
protein 4 homolog; n=1; Tribolium castaneum|Rep:
PREDICTED: similar to elongation protein 4 homolog -
Tribolium castaneum
Length = 1455
Score = 132 bits (320), Expect = 7e-30
Identities = 71/190 (37%), Positives = 105/190 (55%), Gaps = 1/190 (0%)
Frame = +3
Query: 171 SSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVACDHELFVTSLDEDPH 350
SSGI SLD I+GGG+P G++ ++EED+ G ++K++ YF+AEG+ H V S D +P+
Sbjct: 34 SSGIHSLDSILGGGLPVGTVSIIEEDIYGSHAKIMLDYFLAEGIVSKHSTLVASFDTNPY 93
Query: 351 KITSELPQPCALPPEDEKALS-TDAEKMKIAWRYEGLSQVESSFGSNTNFGHNFDLSRYI 527
I LP PE+ S T +EKMKIA+RY+ L E + + GHNFDLS+ +
Sbjct: 94 DIIKNLPAVITNDPEECPIRSETSSEKMKIAFRYQNLPTAEK---ESYSIGHNFDLSKSM 150
Query: 528 DADTIEKSKIQYGTTTWQDSTLSWQTTMRRGKLKSALFHKLLRNIYETVLRSSGTNMLRL 707
+ IE S I Y +++ S +L A+ K+ + +LR+
Sbjct: 151 SLEDIENSDICYWNGQRKETGNSMFANPAYNELLKAVKEKIKEGKFFLKDNPPNRTILRI 210
Query: 708 AIHSLGSPIW 737
IHSLGSP+W
Sbjct: 211 GIHSLGSPMW 220
>UniRef50_Q17D33 Cluster: Pax neighbour protein; n=2; Culicidae|Rep:
Pax neighbour protein - Aedes aegypti (Yellowfever
mosquito)
Length = 370
Score = 130 bits (313), Expect = 5e-29
Identities = 73/206 (35%), Positives = 109/206 (52%), Gaps = 4/206 (1%)
Frame = +3
Query: 132 INGTKVK--NNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVA 305
I GT+ + +SSG PSLDH+ GGG P GSI +EED YS+VL KYF+AEG+
Sbjct: 13 IKGTRASLHSGQAILSSGNPSLDHVFGGGFPIGSIIAIEEDKYANYSRVLTKYFLAEGLI 72
Query: 306 CDHELFVTSLDEDPHKITSELPQPCALPPEDEKALSTDAEKMKIAWRYEGLSQVESSFGS 485
H FV SL+ED ++ +LP P + + E+M+IA+RY L V+ S
Sbjct: 73 NSHSTFVASLEEDSVQLMKKLPTPVKETEPERTPQNQAPEEMRIAFRYNKLGVVDLEQKS 132
Query: 486 NTNFGHNFDLSRYIDADTIEKSKIQY--GTTTWQDSTLSWQTTMRRGKLKSALFHKLLRN 659
+T GH FDLS+ ID + K I Y GT + + ++ + + L +
Sbjct: 133 STQLGHFFDLSKQIDESELTKHDITYWDGTKCPEAPSKTFTNSSFQSLLDAIHLKAKQPQ 192
Query: 660 IYETVLRSSGTNMLRLAIHSLGSPIW 737
++ N+LR+ ++S+GSP+W
Sbjct: 193 FDQSNTEIKDKNLLRICLNSIGSPLW 218
>UniRef50_A2IDB3 Cluster: Elongation protein 4 homolog; n=11;
Eutheria|Rep: Elongation protein 4 homolog - Homo
sapiens (Human)
Length = 531
Score = 121 bits (291), Expect = 2e-26
Identities = 81/220 (36%), Positives = 117/220 (53%), Gaps = 18/220 (8%)
Frame = +3
Query: 132 INGTK--VKNNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVA 305
I GT+ V+N VS+G+P+LD ++GGG+ G++ ++EED +YS +LFKYF+AEG+
Sbjct: 49 IAGTRPSVRNGQLLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIV 108
Query: 306 CDHELFVTSLDEDPHKITSELPQPCALPPEDEKALSTDAE---------KMKIAWRYEGL 458
H L V S EDP I ELP P L + +K D KMKIAWRY+ L
Sbjct: 109 NGHTLLVASAKEDPANILQELPAP-LLDDKCKKEFDEDVYNHKTPESNIKMKIAWRYQLL 167
Query: 459 SQVESSFGSNTNFGHNFDLSRYIDADTIEKSKIQ-YGTTTWQDSTLSWQ-TTMRRGKLKS 632
++E S++ FGH +D S+ + + IE S + STL + ++ G K
Sbjct: 168 PKMEIGPVSSSRFGHYYDASKRMPQELIEASNWHGFFLPEKISSTLKVEPCSLTPGYTK- 226
Query: 633 ALFHKLLRNIYETVLRSSG-----TNMLRLAIHSLGSPIW 737
L + IYE S N+LR+ I +LGSP+W
Sbjct: 227 -LLQFIQNIIYEEGFDGSNPQKKQRNILRIGIQNLGSPLW 265
>UniRef50_Q96EB1 Cluster: Elongator complex protein 4; n=28;
Euteleostomi|Rep: Elongator complex protein 4 - Homo
sapiens (Human)
Length = 424
Score = 121 bits (291), Expect = 2e-26
Identities = 81/220 (36%), Positives = 117/220 (53%), Gaps = 18/220 (8%)
Frame = +3
Query: 132 INGTK--VKNNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVA 305
I GT+ V+N VS+G+P+LD ++GGG+ G++ ++EED +YS +LFKYF+AEG+
Sbjct: 49 IAGTRPSVRNGQLLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIV 108
Query: 306 CDHELFVTSLDEDPHKITSELPQPCALPPEDEKALSTDAE---------KMKIAWRYEGL 458
H L V S EDP I ELP P L + +K D KMKIAWRY+ L
Sbjct: 109 NGHTLLVASAKEDPANILQELPAP-LLDDKCKKEFDEDVYNHKTPESNIKMKIAWRYQLL 167
Query: 459 SQVESSFGSNTNFGHNFDLSRYIDADTIEKSKIQ-YGTTTWQDSTLSWQ-TTMRRGKLKS 632
++E S++ FGH +D S+ + + IE S + STL + ++ G K
Sbjct: 168 PKMEIGPVSSSRFGHYYDASKRMPQELIEASNWHGFFLPEKISSTLKVEPCSLTPGYTK- 226
Query: 633 ALFHKLLRNIYETVLRSSG-----TNMLRLAIHSLGSPIW 737
L + IYE S N+LR+ I +LGSP+W
Sbjct: 227 -LLQFIQNIIYEEGFDGSNPQKKQRNILRIGIQNLGSPLW 265
>UniRef50_Q9VMQ7 Cluster: Putative elongator complex protein 4; n=2;
Sophophora|Rep: Putative elongator complex protein 4 -
Drosophila melanogaster (Fruit fly)
Length = 437
Score = 103 bits (247), Expect = 5e-21
Identities = 67/173 (38%), Positives = 96/173 (55%), Gaps = 8/173 (4%)
Frame = +3
Query: 93 MRSFRKFIDISTHINGTKVKNNLPYV--SSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYS 266
M SFRK + I GT+ + V SSG P LD ++GGG+P GSI ++EED ++
Sbjct: 1 MTSFRKRT-VQKPIRGTRTSPHTAQVITSSGNPYLDVVIGGGLPMGSICLIEEDRFMTHA 59
Query: 267 KVLFKYFIAEGVACDHELFVTSLDEDPHKITSELPQPC----ALPPEDEKAL-STDAEK- 428
KVL KYF+AEGV E+F+ SLD+ P ++ LP+P ++ + +AL AE
Sbjct: 60 KVLAKYFLAEGVISKQEIFLGSLDDIPAEMLRRLPRPLTDQESMEQSEVQALGDAGAENG 119
Query: 429 MKIAWRYEGLSQVESSFGSNTNFGHNFDLSRYIDADTIEKSKIQYGTTTWQDS 587
++IAWRY L V S + GH+F+L +D+ + K TT W DS
Sbjct: 120 LRIAWRYNDLPLVNSEH-ATAKIGHHFNLMEQMDSMMLYNVK----TTLWDDS 167
>UniRef50_Q5DBL9 Cluster: SJCHGC00647 protein; n=3; Schistosoma
japonicum|Rep: SJCHGC00647 protein - Schistosoma
japonicum (Blood fluke)
Length = 340
Score = 96.3 bits (229), Expect = 7e-19
Identities = 67/205 (32%), Positives = 112/205 (54%), Gaps = 3/205 (1%)
Frame = +3
Query: 132 INGTKVKNNLP--YVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVA 305
+NG K L +S+GIPS D ++GGG+ +GSI +VE D Y+K L F+AEG+
Sbjct: 1 MNGVKRSFKLSTFLISTGIPSFDELLGGGVASGSIILVEPDFHQTYAKQLLNLFVAEGIL 60
Query: 306 CDHELFVTSLDEDPHKITSELPQPCALPPEDEKALSTDAEKMKIAWRYEGLSQVESSFGS 485
H +F E ++ +LP + P DE ++ + +KIAWRY+ +S ++
Sbjct: 61 SGHSVFY-GATETLDRLLRKLPD--NITPVDE--VNEETTDLKIAWRYQNVSNTKNLNHF 115
Query: 486 NTNFGHNFDLSRYIDADTIEKSKIQYGTTTWQ-DSTLSWQTTMRRGKLKSALFHKLLRNI 662
+N GH+F+++ +DA + S+ T+++Q DS + QT + +L K ++
Sbjct: 116 TSNLGHHFNMTIPMDA-AAQISEKNVSTSSFQPDSKKTLQTNL------VSLIQKFIKFR 168
Query: 663 YETVLRSSGTNMLRLAIHSLGSPIW 737
T + SSG + R+ I+S GSP+W
Sbjct: 169 SNTKV-SSG--IQRIVINSCGSPMW 190
>UniRef50_Q54XS0 Cluster: RNA polymerase II elongator complex
subunit; n=1; Dictyostelium discoideum AX4|Rep: RNA
polymerase II elongator complex subunit - Dictyostelium
discoideum AX4
Length = 439
Score = 85.4 bits (202), Expect = 1e-15
Identities = 69/230 (30%), Positives = 107/230 (46%), Gaps = 29/230 (12%)
Frame = +3
Query: 135 NGTKV--KNNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVAC 308
NG K+ KN+ S+G+ LD I+GGGIP GSI ++EED+ Y L KYF+AEGV
Sbjct: 48 NGCKISIKNSNLLTSTGLTDLDDIIGGGIPIGSILMIEEDINSSYYMFLLKYFLAEGVLQ 107
Query: 309 DHELFVTSL-DEDPHKITSELPQPCALPPEDE-------KALSTD----------AEKMK 434
+F +SL DP +I ++LP E E ++T+ +++K
Sbjct: 108 QQGVFFSSLIGIDPFEILNKLPARITKEEEIEADKNDTTNNINTNINTNNNNKQPTDELK 167
Query: 435 IAWRYEGL---------SQVESSFGSNTNFGHNFDLSRYIDADTIEKSKIQYGTTTWQDS 587
IAWRY+ Q +S N F H++D +R ++ ++ I T D+
Sbjct: 168 IAWRYQQYVSNELSKQQQQQSASTIMNQTFCHSYDFTRKMNVQSMNPELIH---TLSHDA 224
Query: 588 TLSWQTTMRRGKLKSALFHKLLRNIYETVLRSSGTNMLRLAIHSLGSPIW 737
+ T L + + + + E + T +LRL I S SP+W
Sbjct: 225 QSQAEGTSPYRNLFLEIQNLVYKYNKEAAMNPDQTRVLRLCIQSFSSPLW 274
>UniRef50_Q18195 Cluster: Putative elongator complex protein 4; n=2;
Caenorhabditis|Rep: Putative elongator complex protein 4
- Caenorhabditis elegans
Length = 334
Score = 72.1 bits (169), Expect = 1e-11
Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 4/145 (2%)
Frame = +3
Query: 123 STHINGTKVKNNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGV 302
S I G K L SSG S D ++GG + SI +++E Y L + F+AEG+
Sbjct: 7 SVQIAGCSTKKRLLETSSGCDSFDTLIGGALVNSSIVLIDEYRSRCYGSYLIRSFLAEGL 66
Query: 303 ACDHELFVTSLDEDPHKIT---SELPQPCALPPEDEKALSTDAE-KMKIAWRYEGLSQVE 470
H F+ EDP +I S E +L + E MKIAWRY + QV
Sbjct: 67 HHGHRCFIADPTEDPKEINLIPSRRTSTDMQNQEIPNSLPAENENSMKIAWRYGNVKQVS 126
Query: 471 SSFGSNTNFGHNFDLSRYIDADTIE 545
SS G +N + +D +++++ ++
Sbjct: 127 SSLGPLSN-ENQYDFTKHVENPNVD 150
>UniRef50_Q4W0V9 Cluster: Elongator component; n=5;
Magnoliophyta|Rep: Elongator component - Arabidopsis
thaliana (Mouse-ear cress)
Length = 355
Score = 71.3 bits (167), Expect = 2e-11
Identities = 44/148 (29%), Positives = 75/148 (50%), Gaps = 4/148 (2%)
Frame = +3
Query: 99 SFRKFIDI--STHINGTKV-KNNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSK 269
SF + I + S I G K N ++SSGI LD I+GGG P GS+ +V ED +
Sbjct: 11 SFSRNISVVSSPQIPGLKSGPNGTAFISSGIRDLDRILGGGYPLGSLVMVMEDPEAPHHM 70
Query: 270 VLFKYFIAEGVACDHELFVTSLDEDPHKITSELPQPCALPPEDEKALSTD-AEKMKIAWR 446
L + F+++G+ + L S +DP LP P + + A D E ++IAW+
Sbjct: 71 DLLRTFMSQGLVNNQPLLYASPSKDPKGFLGTLPHPASSKEDKPTAPDPDQGESLRIAWQ 130
Query: 447 YEGLSQVESSFGSNTNFGHNFDLSRYID 530
Y +E+ + ++ ++FD+ + ++
Sbjct: 131 YR--KYLENQKNAIDDYSNDFDMRKPLE 156
>UniRef50_Q8W4Q0 Cluster: AT3g11220/F11B9_116; n=1; Arabidopsis
thaliana|Rep: AT3g11220/F11B9_116 - Arabidopsis thaliana
(Mouse-ear cress)
Length = 243
Score = 68.9 bits (161), Expect = 1e-10
Identities = 36/127 (28%), Positives = 66/127 (51%), Gaps = 1/127 (0%)
Frame = +3
Query: 153 NNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVACDHELFVTS 332
N ++SSGI LD I+GGG P GS+ +V ED + L + ++++G+ + L S
Sbjct: 32 NGTAFISSGIRDLDRILGGGYPLGSLVMVMEDPEAPHHMDLLRTYMSQGLVNNQPLLYAS 91
Query: 333 LDEDPHKITSELPQPCALPPEDEKALSTD-AEKMKIAWRYEGLSQVESSFGSNTNFGHNF 509
+DP LP P + + A D E ++IAW+Y +E+ + ++ ++F
Sbjct: 92 PSKDPKGFLGTLPHPASSKEDKPTAPDPDQGESLRIAWQYR--KYLENQKNAIDDYSNDF 149
Query: 510 DLSRYID 530
D+ + ++
Sbjct: 150 DMRKPLE 156
>UniRef50_Q9USP1 Cluster: RNA polymerase II elongator complex
subunit Elp4; n=1; Schizosaccharomyces pombe|Rep: RNA
polymerase II elongator complex subunit Elp4 -
Schizosaccharomyces pombe (Fission yeast)
Length = 361
Score = 66.5 bits (155), Expect = 6e-10
Identities = 50/148 (33%), Positives = 79/148 (53%), Gaps = 14/148 (9%)
Frame = +3
Query: 171 SSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVACDHELFV-TSLDEDP 347
SSG S D+ + GGIP S+ V+EED + Y+ VL K+F AEG+ DH +++ S+ E
Sbjct: 32 SSGSSSFDYYLSGGIPMKSLLVIEEDSMD-YASVLLKFFAAEGLKQDHVIWLGPSIGEMW 90
Query: 348 HKITSELPQPCALPPEDEKALSTD-----------AEKMKIAWRYEGLSQVESSFGS--N 488
+ +LP P ++E + D E+MKIAWRYE +S+ ++
Sbjct: 91 FR---QLPGDSDRPNKNENSAGEDNHSSPPSKNPQQERMKIAWRYEQVSKTKAPTLDMIP 147
Query: 489 TNFGHNFDLSRYIDADTIEKSKIQYGTT 572
+ H+FDLS+ + I KS ++Y +
Sbjct: 148 PGYTHSFDLSK----NLIVKSDMKYAVS 171
>UniRef50_Q1EPK3 Cluster: Paxneb-related protein; n=1; Musa
acuminata|Rep: Paxneb-related protein - Musa acuminata
(Banana)
Length = 291
Score = 65.3 bits (152), Expect = 1e-09
Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 12/149 (8%)
Frame = +3
Query: 153 NNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVACDHELFVTS 332
N +VSSGIP LD I+GGG GS+ +V ED + +L + F+++GV + S
Sbjct: 44 NGATFVSSGIPDLDRILGGGFLLGSLVMVMEDADAPHHLLLLRNFMSQGVVHRQPVLFAS 103
Query: 333 LDEDPHKITSELPQPCALPPEDEKA------LSTDAEK-MKIAWRYEG-LSQVESSFGSN 488
DP LP P + E + D EK ++IAW+Y+ +SS N
Sbjct: 104 PLRDPRAFLGTLPSPVSSSKEHRQRDTLVDHNQQDQEKGLRIAWQYKKYFGDQQSSQNHN 163
Query: 489 TN----FGHNFDLSRYIDADTIEKSKIQY 563
+ F ++FDL + T+E+ +QY
Sbjct: 164 RDVKQEFSNDFDLRK-----TLERQHVQY 187
>UniRef50_A1DE76 Cluster: PAXNEB protein superfamily; n=5;
Pezizomycotina|Rep: PAXNEB protein superfamily -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 393
Score = 64.1 bits (149), Expect = 3e-09
Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
Frame = +3
Query: 162 PYVSSGIPSLDHIVGG--GIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVACDHELFVTSL 335
P S+G SLD+++ G G+P G I ++EE+ ++ L +Y+ AEGV D + V +
Sbjct: 48 PTTSTGTRSLDNLLAGHGGLPIGKILLIEENGTTDFAGALLRYYAAEGVVQDQMVHVIGM 107
Query: 336 DEDPHKITSELPQPCALPPEDEKALSTDAEKMKIAWRYEGLSQ 464
E + L P + DEK+ +E+MKIAWRYE L +
Sbjct: 108 PEQWGRSLPGLIGPADM--LDEKSDKKKSERMKIAWRYERLGE 148
>UniRef50_Q2UE77 Cluster: RNA polymerase II elongator complex; n=7;
Pezizomycotina|Rep: RNA polymerase II elongator complex
- Aspergillus oryzae
Length = 396
Score = 63.7 bits (148), Expect = 5e-09
Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Frame = +3
Query: 162 PYVSSGIPSLDHIVGG--GIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVACDHELFVTSL 335
P S+G SLD+++ G G+P G ++EE+ ++ L +Y+ AEGV D ++ V +
Sbjct: 48 PTTSTGSRSLDNLLAGHGGLPIGKTLLIEENGTTDFAGALLRYYAAEGVVQDQKVHVVGM 107
Query: 336 DEDPHKITSELPQPCALPPEDEKALSTDAEKMKIAWRYEGLSQ 464
E + L P + DEK E+MKIAWRYE L +
Sbjct: 108 PEQWGRSLPGLIGPADV--ADEKPAKRKGERMKIAWRYERLGE 148
>UniRef50_A4RHK2 Cluster: Putative uncharacterized protein; n=3;
Sordariomycetes|Rep: Putative uncharacterized protein -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 407
Score = 59.7 bits (138), Expect = 7e-08
Identities = 62/203 (30%), Positives = 92/203 (45%), Gaps = 16/203 (7%)
Frame = +3
Query: 171 SSGIPSLDHIVGG--GIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVACDHELFVTSLDED 344
S+G SLD ++ G G+P G+ +VEE +S VL +Y+ AEG+ H + + E
Sbjct: 52 STGTASLDTLLAGHAGLPLGTSLLVEEQGTTDFSGVLLRYYAAEGLVQGHHVHALAFPEA 111
Query: 345 -----PHKITSELPQPCALPPEDEKALSTDAEKMKIAWRYEGL----SQV----ESSFGS 485
P + P + + +KMKIAWRYE L SQ E + G
Sbjct: 112 WKYELPALSYVSKSSSGSTPSRTFASADSAGDKMKIAWRYEALGNSRSQAQPARERAGGP 171
Query: 486 NTN-FGHNFDLSRYIDADTIEKSKIQYGTTTWQDSTLSWQTTMRRGKLKSALFHKLLRNI 662
++ F H++DLS+ + I K Q+ + S LSW LF K L+N
Sbjct: 172 GSSVFCHSYDLSKRLSTSDI---KGQFHSIP-SVSPLSWSLEQLAEASPLRLFIKHLQN- 226
Query: 663 YETVLRSSGTNMLRLAIHSLGSP 731
++ SS + R+ I SL SP
Sbjct: 227 --SLSSSSPNTIHRVIIPSLLSP 247
>UniRef50_A2YFG1 Cluster: Putative uncharacterized protein; n=3;
Magnoliophyta|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 462
Score = 54.0 bits (124), Expect = 4e-06
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Frame = +3
Query: 153 NNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVACDHELFVTS 332
N +VSSGIP LD I+GGG GS+ ++ ED + +L + F+A+GV L
Sbjct: 37 NGAAFVSSGIPDLDRILGGGFLIGSVVMIMEDSDAPHHLLLLRNFMAQGVVHKQPLLFAG 96
Query: 333 LDEDPHKITSELPQPCALPPEDEK------ALSTDA----EKMKIAWRYE 452
++P LP A ED + S+D E ++IAW+Y+
Sbjct: 97 PMKEPRLFLGTLP-AVASSKEDGRQRGMGAGTSSDGRTSDEALRIAWQYK 145
>UniRef50_Q55JE8 Cluster: Putative uncharacterized protein; n=2;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 448
Score = 51.6 bits (118), Expect = 2e-05
Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 5/188 (2%)
Frame = +3
Query: 189 LDHIVGGGIPAGSIFVV-EEDVLGVYSKVLFKYFIAEGVACDHELFVTSLDEDPHKITSE 365
+D ++GGG+P SI +V D + ++L +Y+I++G+A + E+ +
Sbjct: 1 MDDLLGGGLPLHSILLVLAPDTQSAWGRLLERYWISQGLASGQAGVLVGEKEEGEAVVKG 60
Query: 366 LPQP----CALPPEDEKALSTDAEKMKIAWRYEGLSQVESSFGSNTNFGHNFDLSRYIDA 533
E E + + KIAWRYE + + +++ N G N L I
Sbjct: 61 CMWTEGGVSGDGSESEGEGGVEGGERKIAWRYEKMGKFQTTVKGN---GSNLSLMTTIPP 117
Query: 534 DTIEKSKIQYGTTTWQDSTLSWQTTMRRGKLKSALFHKLLRNIYETVLRSSGTNMLRLAI 713
+ + + + G ++ +T R S + ++L+ ++E + + RLA+
Sbjct: 118 EALSLMQ-ESGQMSYVAINPDEPSTSR-----SCVLDEVLKGVWEKLQHADKGRATRLAV 171
Query: 714 HSLGSPIW 737
H LGS W
Sbjct: 172 HELGSLDW 179
>UniRef50_Q0W4S2 Cluster: Putative uncharacterized protein; n=1;
uncultured methanogenic archaeon RC-I|Rep: Putative
uncharacterized protein - Uncultured methanogenic
archaeon RC-I
Length = 250
Score = 50.8 bits (116), Expect = 3e-05
Identities = 30/86 (34%), Positives = 48/86 (55%)
Frame = +3
Query: 141 TKVKNNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVACDHEL 320
T++KN S GI LD+ + GGIP GS+ ++EED G S +L F+AEG+ +
Sbjct: 2 TEIKNR---ASFGIADLDNALDGGIPRGSLILLEEDT-GARSGILQTKFVAEGLLNNEYC 57
Query: 321 FVTSLDEDPHKITSELPQPCALPPED 398
++ +++ P I + L L PE+
Sbjct: 58 YLFNMEHPPQAIINSL-STFGLEPEE 82
>UniRef50_Q6C0T6 Cluster: Similar to tr|Q02884 Saccharomyces
cerevisiae LPG7P; n=1; Yarrowia lipolytica|Rep: Similar
to tr|Q02884 Saccharomyces cerevisiae LPG7P - Yarrowia
lipolytica (Candida lipolytica)
Length = 379
Score = 49.6 bits (113), Expect = 8e-05
Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 6/145 (4%)
Frame = +3
Query: 147 VKNNLPYVSSGIPSLDHIVG-GGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGV-----AC 308
++++ P VSSG D +VG GIP G++ ++EE+ Y+ +L + F A+G
Sbjct: 74 LQSSTPTVSSGCFDFDKLVGHNGIPTGTLTLLEEESTTDYASILIRMFAAQGCIDRRNGG 133
Query: 309 DHELFVTSLDEDPHKITSELPQPCALPPEDEKALSTDAEKMKIAWRYEGLSQVESSFGSN 488
V + D ++ E + KA + MKIAWRY S+VE
Sbjct: 134 SEVAVVGANDAWGRQLPGESDKKSRSRDPSSKA---GSGAMKIAWRYGYNSEVERKEQLA 190
Query: 489 TNFGHNFDLSRYIDADTIEKSKIQY 563
N FDL++ + I SKI+Y
Sbjct: 191 ENNTATFDLTKRLGGPEI--SKIRY 213
>UniRef50_UPI000023D6AB Cluster: hypothetical protein FG04274.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG04274.1 - Gibberella zeae PH-1
Length = 319
Score = 48.8 bits (111), Expect = 1e-04
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Frame = +3
Query: 213 IPAGSIFVVEEDVLGVYSKVLFKYFIAEGVACDHELFVTSLDEDPHKITSELPQPCALPP 392
+P G+ +VEE + VL +Y+ AEG+ H++ + + + L P
Sbjct: 1 MPMGTSLLVEETGTTDFGGVLLRYYAAEGLVQGHQVHLLGFGDAWRRELPGLGNPEG--S 58
Query: 393 EDEKALSTDAEKMKIAWRYEGL---------SQVESSFGS-NTNFGHNFDLSRYIDADTI 542
K+ S+ +KMKIAWRYE L SQ +S G + F H FDL++ ++ I
Sbjct: 59 RKSKSSSSSDDKMKIAWRYETLGQRNIPARDSQGPTSPGQIQSTFCHTFDLTKRLENSAI 118
Query: 543 E 545
+
Sbjct: 119 K 119
>UniRef50_Q4PGP1 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 711
Score = 44.4 bits (100), Expect = 0.003
Identities = 49/163 (30%), Positives = 68/163 (41%), Gaps = 20/163 (12%)
Frame = +3
Query: 309 DHELFVTSLDEDPHKITSELPQPCALPPEDE-KALSTDAEK---MKIAWRYEGLSQV--- 467
DH V D+ + TS + + EDE + S AE+ MKIAWRY + Q
Sbjct: 213 DHLDTVADDDDMQNSETSSVSGAASAEGEDEGEGRSNRAERERGMKIAWRYHSMKQFNTT 272
Query: 468 --ESSFGSN-----TNFGHNFDLSRYIDADTIEKSKIQYGTTTWQDSTLSWQTTMRRGKL 626
E S S+ T F H FDLSR ID ++ + Q ST S +T R
Sbjct: 273 VNEPSSSSSPSSQPTPFCHTFDLSRRIDGRIVQHAVEQNKLEMVDISTASKASTSRDINS 332
Query: 627 KSALFHKL------LRNIYETVLRSSGTNMLRLAIHSLGSPIW 737
+ + R E+ + +LR+AI +LGS W
Sbjct: 333 YEVAYRHIEAVADRCRRQAESASSTVAPPVLRIAIRALGSSAW 375
>UniRef50_A4G1Y6 Cluster: Putative uncharacterized protein; n=1;
Herminiimonas arsenicoxydans|Rep: Putative
uncharacterized protein - Herminiimonas arsenicoxydans
Length = 480
Score = 43.6 bits (98), Expect = 0.005
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +3
Query: 168 VSSGIPSLDHIVGGGIPAG-SIFVVEEDVLGVYSKVLFKYFIAEGVACDHELFVTSLDED 344
+S G+P+LD ++GGG+PAG S+ +V G VL F+AEGV + + ++
Sbjct: 251 LSMGVPALDEMMGGGLPAGYSLLLVGPS--GSGKTVLATQFLAEGVRAGEPGVIAAFEKS 308
Query: 345 PHKITS 362
P+++ S
Sbjct: 309 PNQLLS 314
>UniRef50_Q5JES3 Cluster: ATPase, RecA superfamily; n=1;
Thermococcus kodakarensis KOD1|Rep: ATPase, RecA
superfamily - Pyrococcus kodakaraensis (Thermococcus
kodakaraensis)
Length = 237
Score = 42.3 bits (95), Expect = 0.012
Identities = 24/71 (33%), Positives = 35/71 (49%)
Frame = +3
Query: 156 NLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVACDHELFVTSL 335
NL + SG+P LD ++GGG G ++VV G L F+AEG D + +L
Sbjct: 9 NLDRIPSGVPGLDELIGGGFLPGRVYVVTGPP-GSGKTTLGMQFLAEGAKNDEKGLFIAL 67
Query: 336 DEDPHKITSEL 368
E P I ++
Sbjct: 68 FETPDIIVRDM 78
>UniRef50_O29896 Cluster: Putative uncharacterized protein; n=1;
Archaeoglobus fulgidus|Rep: Putative uncharacterized
protein - Archaeoglobus fulgidus
Length = 226
Score = 40.7 bits (91), Expect = 0.036
Identities = 24/66 (36%), Positives = 31/66 (46%)
Frame = +3
Query: 168 VSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVACDHELFVTSLDEDP 347
+ +GI LD I+GGGIP G I V G L +FI EG+ + S DED
Sbjct: 2 LKTGIEGLDAILGGGIPEGHIVAVVGQ-YGTGKTTLGLHFIYEGLKNGEACMIISFDEDE 60
Query: 348 HKITSE 365
I +
Sbjct: 61 ESIIGD 66
>UniRef50_O29732 Cluster: Putative uncharacterized protein; n=1;
Archaeoglobus fulgidus|Rep: Putative uncharacterized
protein - Archaeoglobus fulgidus
Length = 236
Score = 40.3 bits (90), Expect = 0.048
Identities = 23/63 (36%), Positives = 34/63 (53%)
Frame = +3
Query: 168 VSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVACDHELFVTSLDEDP 347
V +GI LD +GGG+PAGS+ V E+ G + VL +F EG +F + D+
Sbjct: 4 VKTGILPLDTQLGGGMPAGSVVSVFEEP-GAGADVLSYHFTVEGATHGENVFYLATDDSS 62
Query: 348 HKI 356
+I
Sbjct: 63 EEI 65
>UniRef50_UPI00006CB1E6 Cluster: hypothetical protein
TTHERM_00301820; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00301820 - Tetrahymena
thermophila SB210
Length = 341
Score = 37.9 bits (84), Expect = 0.26
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Frame = +3
Query: 144 KVKNNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVACDHELF 323
K K++L G D I I G+ ++EED +YF+ G + F
Sbjct: 13 KAKDDLNKAFFGHAEFDAIFSNSIKKGTTILIEEDYPTSMHVSFNRYFVGCGFHLEQNCF 72
Query: 324 VTSL------DEDPHKITSELPQPCALPPEDEKALSTDAEKMKIAWRYEGLS 461
V + D P K TSE + +++ A+S E+ KIAWRY ++
Sbjct: 73 VYDVFPKRWYDMIPVKSTSEEKRE-----QEKLAISKQKEENKIAWRYNHMT 119
>UniRef50_Q8D8I8 Cluster: RecA/RadA recombinase; n=4; Vibrio|Rep:
RecA/RadA recombinase - Vibrio vulnificus
Length = 227
Score = 37.1 bits (82), Expect = 0.45
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +3
Query: 129 HINGTKVKNNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGV 260
H N T+ N Y +SGI LD ++GGG P + V E LG+
Sbjct: 16 HANSTRCANESCYQTSGIDELDKLLGGGFPQHGV-VEMESALGI 58
>UniRef50_A0GFK5 Cluster: RAD55; n=2; Burkholderia|Rep: RAD55 -
Burkholderia phytofirmans PsJN
Length = 531
Score = 37.1 bits (82), Expect = 0.45
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Frame = +3
Query: 105 RKFIDISTHINGTKVKNNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKY 284
R D ST N ++ V +G+P LD I+GGG+ G ++++ E + G +L
Sbjct: 33 RTLNDSSTMTNHESQTSSRSNVETGVPGLDEILGGGLVRGGVYLL-EGMAGAGKTILSSQ 91
Query: 285 FIAEGVACDHE-LFVTSLDEDPHKITSELPQPCALPPEDEKALS 413
V+ + L++T + E K+ L L DEKA++
Sbjct: 92 IGFHRVSQGEKVLYMTLIAESHDKLLGHLK---GLSFFDEKAVA 132
>UniRef50_A4SAZ1 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 429
Score = 36.7 bits (81), Expect = 0.59
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 12/106 (11%)
Frame = +3
Query: 168 VSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLF-KYFIAEGVAC--DHELFVTSLD 338
VSSG D ++GGG GS+ D +++ LF F+AEG A +V +
Sbjct: 78 VSSGHGDADALLGGGHALGSLAACASDGASAHAEALFGACFVAEGAATARHRTCWVRAGR 137
Query: 339 EDPHKITSELPQPCALPPEDEKALSTD---------AEKMKIAWRY 449
E + T LP+ + E E A +TD ++ ++IAW+Y
Sbjct: 138 EGRAEATRTLPRR-VVEREGESATTTDDRASEASEASDGLRIAWQY 182
>UniRef50_Q12XV7 Cluster: KaiC; n=1; Methanococcoides burtonii DSM
6242|Rep: KaiC - Methanococcoides burtonii (strain DSM
6242)
Length = 301
Score = 36.7 bits (81), Expect = 0.59
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +3
Query: 168 VSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVACDHELFVTSLDE 341
VS+G+ LD ++ GG+P GS +V G L F+ EGV D + S +E
Sbjct: 62 VSTGVAGLDDMLEGGVPKGSSVIVTGPP-GTGKTTLCMQFLMEGVKADEKCLFFSFEE 118
>UniRef50_Q6LUG7 Cluster: DNA repair protein radA; n=7;
Proteobacteria|Rep: DNA repair protein radA -
Photobacterium profundum (Photobacterium sp. (strain
SS9))
Length = 459
Score = 35.9 bits (79), Expect = 1.0
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +3
Query: 141 TKVKN-NLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVACDHE 317
++V+N +LP SSGI D ++GGGI GS+ ++ D G L I A
Sbjct: 65 SEVENKDLPRFSSGIGEFDRVLGGGIVPGSVLLLCGDP-GAGKSTLLLQSIGAVAAIKSA 123
Query: 318 LFVTSLDEDPHKIT 359
L+V+ +E H+I+
Sbjct: 124 LYVSG-EESIHQIS 136
>UniRef50_Q2IEE4 Cluster: Protein recA; n=1; Anaeromyxobacter
dehalogenans 2CP-C|Rep: Protein recA - Anaeromyxobacter
dehalogenans (strain 2CP-C)
Length = 494
Score = 35.5 bits (78), Expect = 1.4
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +3
Query: 159 LPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVACDHELFVTSLD 338
L VS+G+ LD ++GGGIPA SI VV + + + + L+ T+L
Sbjct: 10 LERVSTGVEGLDQVLGGGIPAKSITVVSGEPGSGKTVLALQMLFHAARQGKRSLYFTTLS 69
Query: 339 EDPHKITSEL 368
E K+ +
Sbjct: 70 EPSLKLVRHM 79
>UniRef50_Q02884 Cluster: Elongator complex protein 4; n=2;
Saccharomyces cerevisiae|Rep: Elongator complex protein
4 - Saccharomyces cerevisiae (Baker's yeast)
Length = 456
Score = 34.7 bits (76), Expect = 2.4
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 162 PYVSSGIPSLDHIVGG-GIPAGSIFVVEEDVLGVYSKVLFKYFIAEGV 302
P S+G LD I+G G+P G+ +VEE + +L K F A+G+
Sbjct: 84 PTTSTGSADLDSILGHMGLPLGNSVLVEEQSTTEFHSILGKLFAAQGI 131
>UniRef50_A0E5J0 Cluster: Chromosome undetermined scaffold_8, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_8,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 305
Score = 34.3 bits (75), Expect = 3.2
Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 1/138 (0%)
Frame = +3
Query: 135 NGTKVKNNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVACDH 314
N K N Y G P LD ++G + G I +E+D K L +Y I +H
Sbjct: 9 NSKKEDPNKAYF--GHPELDALLGNTLLKGQIIFIEQDSPTTIYKQLLRYCIGNSFHKNH 66
Query: 315 -ELFVTSLDEDPHKITSELPQPCALPPEDEKALSTDAEKMKIAWRYEGLSQVESSFGSNT 491
+ E KI + Q ++EK + KIAWRY + Q + ++
Sbjct: 67 VSILFDQFCEQWSKIVPK-KQVENQSQQEEKEMQN-----KIAWRYNQMQQQFTIKNIDS 120
Query: 492 NFGHNFDLSRYIDADTIE 545
+ + DLS+ T+E
Sbjct: 121 SIFY-LDLSKSETEQTVE 137
>UniRef50_Q6CLZ1 Cluster: Kluyveromyces lactis strain NRRL Y-1140
chromosome E of strain NRRL Y- 1140 of Kluyveromyces
lactis; n=3; Saccharomycetales|Rep: Kluyveromyces lactis
strain NRRL Y-1140 chromosome E of strain NRRL Y- 1140
of Kluyveromyces lactis - Kluyveromyces lactis (Yeast)
(Candida sphaerica)
Length = 478
Score = 34.3 bits (75), Expect = 3.2
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
Frame = +3
Query: 171 SSGIPSLDHIVG-GGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVACDH-ELFVTSLDED 344
S+G LD ++G G P G ++EE+ ++ +L K + ++G+ + E D +
Sbjct: 108 STGCTDLDKLMGHSGFPLGCSLLIEEESTTDFNSILTKVYASQGIVHNRIEGSHGFKDGN 167
Query: 345 PHKITSELPQPCALP-PEDEKALSTDAEKMKIAWRYEGL---SQVESSFGSNTNFGHNFD 512
H I L P K D +K KIA + + +ES SNT+ N D
Sbjct: 168 THLIVLSLNHHLTKELPGVYKGSRKDIKKSKIAQEQSKVTVSNLLESQSKSNTSAQRNKD 227
Query: 513 L 515
L
Sbjct: 228 L 228
>UniRef50_UPI0000E0F49C Cluster: hypothetical
5-formyltetrahydrofolatecyclo-ligase-family protein;
n=1; alpha proteobacterium HTCC2255|Rep: hypothetical
5-formyltetrahydrofolatecyclo-ligase-family protein -
alpha proteobacterium HTCC2255
Length = 211
Score = 33.9 bits (74), Expect = 4.2
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = -1
Query: 304 ATPSAMKYLNNTLLYTPRTSSSTTKMLPAGIPPPTIWSKDGIPEDTYGRLFFTFVPF 134
A P + TLL+ TS S GIP P + ++D IP T R+F V F
Sbjct: 78 ALPVLHPFHPQTLLFVRYTSQSNMTKNKFGIPEPQLTTQDIIPIHTINRIFVPLVGF 134
>UniRef50_Q81QK6 Cluster: Protoporphyrinogen oxidase; n=16;
Bacillus|Rep: Protoporphyrinogen oxidase - Bacillus
anthracis
Length = 466
Score = 33.9 bits (74), Expect = 4.2
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +3
Query: 543 EKSKIQYGTTTWQDSTLSWQTTMRRGKLKSALFHKLLRNIYETVLRSSGTNMLRLAIHSL 722
E S + TW ++ W+ T + KL +F+K +YET+ S ++R+A++ +
Sbjct: 327 ENSDLHCDACTW--TSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEELVRVALYDI 384
>UniRef50_Q17CU0 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 607
Score = 33.9 bits (74), Expect = 4.2
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = -1
Query: 352 LCGSSSKDVTNNSWSQATPSAMKYLNNTLLYTPRTSSSTTKMLP 221
LC SSS ++++ S T S + +L+ T ++P SSST + P
Sbjct: 366 LCSSSSSGQSHSTHSNPTTSVISHLSPTSAHSPINSSSTASITP 409
>UniRef50_Q64C90 Cluster: Predicted ATP-dependent serine protease;
n=2; environmental samples|Rep: Predicted ATP-dependent
serine protease - uncultured archaeon GZfos1D1
Length = 989
Score = 33.9 bits (74), Expect = 4.2
Identities = 19/74 (25%), Positives = 35/74 (47%)
Frame = +3
Query: 147 VKNNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVACDHELFV 326
V N L V +G+ +D ++GGG+ GS ++ + K+L FI +G+ + +
Sbjct: 763 VGNLLDIVPTGLEEMDKVMGGGLAKGSSTLLIAEETRTKHKILLS-FIKQGLRASNSVIY 821
Query: 327 TSLDEDPHKITSEL 368
+ +I EL
Sbjct: 822 ATAKRPARQIQGEL 835
>UniRef50_A2SRJ6 Cluster: RecA-superfamily ATPase implicated in
signal transduction-like protein; n=1;
Methanocorpusculum labreanum Z|Rep: RecA-superfamily
ATPase implicated in signal transduction-like protein -
Methanocorpusculum labreanum (strain ATCC 43576 / DSM
4855 / Z)
Length = 238
Score = 33.9 bits (74), Expect = 4.2
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3
Query: 168 VSSGIPSLDHIVGGGIPAGSIFVV 239
+ SGIP LD ++GGG GS+FV+
Sbjct: 11 IPSGIPGLDDMIGGGFIKGSVFVL 34
>UniRef50_Q0RBD5 Cluster: Putative uncharacterized protein; n=1;
Frankia alni ACN14a|Rep: Putative uncharacterized
protein - Frankia alni (strain ACN14a)
Length = 3144
Score = 33.5 bits (73), Expect = 5.5
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -1
Query: 355 ILCGSSSKDVTNNSWSQATPSAMKYLNNTLLYTPRTSSSTTKMLPAGIPPPTIWSKD-GI 179
++ +++ + +S ATP + K + + T RT S T +P+G+ P + W+ GI
Sbjct: 291 VVVNPTAQTIVTDSGVSATPGSYKVIFTPVGGTSRTLSGTLPTVPSGLYPSSSWTTPAGI 350
Query: 178 P 176
P
Sbjct: 351 P 351
>UniRef50_Q08XB9 Cluster: KaiC domain protein; n=1; Stigmatella
aurantiaca DW4/3-1|Rep: KaiC domain protein -
Stigmatella aurantiaca DW4/3-1
Length = 491
Score = 33.5 bits (73), Expect = 5.5
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +3
Query: 174 SGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVACDHELFVTSLDEDPH 350
SGIPS D ++GGGIP ++ D G +L A D + + ++ +PH
Sbjct: 13 SGIPSFDALLGGGIPRRQSLIITGDP-GCGKTILCGQVAFRAAARDVPVVLATVTSEPH 70
>UniRef50_Q5A2U1 Cluster: Putative uncharacterized protein RAD57;
n=1; Candida albicans|Rep: Putative uncharacterized
protein RAD57 - Candida albicans (Yeast)
Length = 511
Score = 33.5 bits (73), Expect = 5.5
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +3
Query: 165 YVSSGIPSLDHIVGGGIPAGSI 230
++S+G+PS+D +GGGIP G +
Sbjct: 84 FISTGLPSIDRELGGGIPIGEV 105
>UniRef50_Q8TQM7 Cluster: Putative uncharacterized protein; n=1;
Methanosarcina acetivorans|Rep: Putative uncharacterized
protein - Methanosarcina acetivorans
Length = 584
Score = 33.5 bits (73), Expect = 5.5
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -1
Query: 283 YLNNTLLYTPRTSSSTTKMLPAGIPPPTIWSKDGIPEDTYGRLFFTF 143
YLN + T S T + P I PPT +DG+ ED G F
Sbjct: 496 YLNTNVCIKAFTDSGTLSVFPGYINPPTDLDQDGLYEDVNGNGILDF 542
>UniRef50_Q9RVC4 Cluster: DNA repair protein radA; n=4;
Deinococci|Rep: DNA repair protein radA - Deinococcus
radiodurans
Length = 503
Score = 33.1 bits (72), Expect = 7.3
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 162 PYVSSGIPSLDHIVGGGIPAGSIFVV 239
P SGIP LD ++GGG+ AG + ++
Sbjct: 130 PRTPSGIPELDRVLGGGLVAGGVTLI 155
>UniRef50_A1WPH7 Cluster: Tfp pilus assembly protein tip-associated
adhesin PilY1-like protein precursor; n=1;
Verminephrobacter eiseniae EF01-2|Rep: Tfp pilus
assembly protein tip-associated adhesin PilY1-like
protein precursor - Verminephrobacter eiseniae (strain
EF01-2)
Length = 1658
Score = 33.1 bits (72), Expect = 7.3
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 117 DISTHINGTKVKNNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDV 251
D++T N K+K +S G P +D +V G +P +++ E V
Sbjct: 640 DLATVENALKIKTMAVSLSGGAPRIDVLVPGSVPPKYVYITPESV 684
>UniRef50_A2QYI6 Cluster: Similarity: Most weak blast hits are
caused by repetetive sequence elements; n=6;
Pezizomycotina|Rep: Similarity: Most weak blast hits are
caused by repetetive sequence elements - Aspergillus
niger
Length = 667
Score = 33.1 bits (72), Expect = 7.3
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +3
Query: 363 ELPQPCALPPEDEKALSTDAEKMKIAWRYEGLSQVESS-FGSNTN-FGHNFDLSRYIDAD 536
EL ALPP K+ + D +K W+ E FG T H + Y+D
Sbjct: 255 ELELGMALPPRIRKSKTGDWPYIKGGWKLNKAQYAEPVYFGDGTGALDHKLGQAEYLDKM 314
Query: 537 TIEKSKIQ 560
IEK+K++
Sbjct: 315 VIEKAKVR 322
>UniRef50_A2BKD6 Cluster: Universally conserved protein; n=1;
Hyperthermus butylicus DSM 5456|Rep: Universally
conserved protein - Hyperthermus butylicus (strain DSM
5456 / JCM 9403)
Length = 250
Score = 33.1 bits (72), Expect = 7.3
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = +3
Query: 162 PYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVACDHELFVTSLDE 341
P V G+P LD ++ GIP S+ ++ D G ++ + + ++ LD+
Sbjct: 4 PNVKFGVPILDKLLPRGIPRRSLVIMVGD-SGTGKSLITQLMAGSFLQRGEKVIYVCLDD 62
Query: 342 DPHKITSEL 368
DP I S +
Sbjct: 63 DPESIVSSM 71
>UniRef50_P38450 Cluster: Uncharacterized mitochondrial protein
ymf1; n=2; Embryophyta|Rep: Uncharacterized
mitochondrial protein ymf1 - Marchantia polymorpha
(Liverwort)
Length = 168
Score = 33.1 bits (72), Expect = 7.3
Identities = 23/79 (29%), Positives = 34/79 (43%)
Frame = -1
Query: 337 SKDVTNNSWSQATPSAMKYLNNTLLYTPRTSSSTTKMLPAGIPPPTIWSKDGIPEDTYGR 158
+K+ NN+WSQ PSA N LLY S+ M I T + + +G
Sbjct: 93 AKEAPNNTWSQLLPSASYSQNLVLLYGQDRSTVFNHM---DIKKATTLETTSVFQQLFGF 149
Query: 157 LFFTFVPFICVLISINFRK 101
+F F+ ++ N RK
Sbjct: 150 MFLPGACFLFLVEQANGRK 168
>UniRef50_Q5XDA1 Cluster: Putative uncharacterized protein; n=12;
Streptococcus pyogenes|Rep: Putative uncharacterized
protein - Streptococcus pyogenes serotype M6
Length = 252
Score = 32.7 bits (71), Expect = 9.7
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +3
Query: 156 NLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEG-VACDHELFVTS 332
N+PY+ G S++ ++ I F+ + DVL + SKV+ IAEG V +E+ V+
Sbjct: 18 NIPYLKEG-DSIEKLIEESIKTSGFFIEDNDVLCIASKVV---SIAEGQVMSLNEIQVSD 73
Query: 333 LDEDPHK 353
+ ++ H+
Sbjct: 74 VAKEIHR 80
>UniRef50_Q2ZYJ0 Cluster: Putative uncharacterized protein; n=1;
Streptococcus suis 89/1591|Rep: Putative uncharacterized
protein - Streptococcus suis 89/1591
Length = 133
Score = 32.7 bits (71), Expect = 9.7
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 554 NPVWYYNLARQYFKLANNYAQREIKKC 634
NP+WY LA Q F+ A++E KKC
Sbjct: 105 NPMWYLKLALQDFEHMKKLAKKEAKKC 131
>UniRef50_Q11IP6 Cluster: Phosphate transporter; n=21;
Alphaproteobacteria|Rep: Phosphate transporter -
Mesorhizobium sp. (strain BNC1)
Length = 520
Score = 32.7 bits (71), Expect = 9.7
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = -1
Query: 691 VPLLLNTVS*IFLSNL*NKALFNFPLRIVV--CQLKVLSCQVVVPYWILLFSIVSASMYL 518
VPL+++ F + A PL +V Q +S +VV+P W+++ S+ L
Sbjct: 306 VPLIISAALLSFAHGANDVANAVGPLAAIVSAAQSNTVSAEVVIPVWVMIIGAFGISLGL 365
Query: 517 LKSKLCPKLVLLPNDDSTWLKP 452
L PKL+ + + T L P
Sbjct: 366 L--LFGPKLIRMVGEQITKLNP 385
>UniRef50_Q338Y6 Cluster: Expressed protein; n=9; Magnoliophyta|Rep:
Expressed protein - Oryza sativa subsp. japonica (Rice)
Length = 422
Score = 32.7 bits (71), Expect = 9.7
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +3
Query: 324 VTSLDEDPHKITSELPQPCALPPEDEKALSTDAEKMKIAWRYEGL-SQVESSFGS-NTNF 497
+T L E H + P+P A P+D + LS E+ + YE + + +S + +T
Sbjct: 79 LTKLSELKHAYREKNPKPVAATPQDARLLSEIQEQQNLLKTYEVMVKKFQSQIQTRDTEI 138
Query: 498 GHNFDLSRYIDADTIEKSKIQ 560
H L + ID + KSK++
Sbjct: 139 TH---LQQQIDEAKLRKSKLE 156
>UniRef50_Q8ZXQ7 Cluster: Putative uncharacterized protein PAE1156;
n=5; Thermoproteaceae|Rep: Putative uncharacterized
protein PAE1156 - Pyrobaculum aerophilum
Length = 268
Score = 32.7 bits (71), Expect = 9.7
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +3
Query: 168 VSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGV-ACDHELFVTSLDE 341
+S+G+ LD + GGIP GS VV + GV +L +F G+ A D ++VT+ E
Sbjct: 4 ISTGVDVLDKALEGGIPQGSWVVVTGEP-GVGKSILCIHFAYAGLRAGDPVVYVTTEQE 61
>UniRef50_Q58527 Cluster: Uncharacterized protein MJ1127; n=6;
Methanococcales|Rep: Uncharacterized protein MJ1127 -
Methanococcus jannaschii
Length = 280
Score = 32.7 bits (71), Expect = 9.7
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +3
Query: 144 KVKNNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYF--IAEGVACDHE 317
++ + L Y + D IVG G + V EDV +++L KY +A+ + C +
Sbjct: 99 RIVDALNYAKKLVEEYDFIVGIGEVGRPHYPVSEDVWKASNEIL-KYCMELAKDIGCAIQ 157
Query: 318 LFVTSLDEDPHKITSELPQPCALPPE 395
+ S E+ K SE+ + L PE
Sbjct: 158 IHAESSTEEQFKEFSEMAKEVGLNPE 183
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 747,974,759
Number of Sequences: 1657284
Number of extensions: 15858113
Number of successful extensions: 47344
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 45050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47280
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60088620670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -