Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n17
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp...    66   4e-12
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    31   0.17 
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    29   0.91 
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    27   2.1  
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c...    27   2.1  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   3.7  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   4.9  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    26   4.9  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    26   6.4  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   6.4  

>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 66.5 bits (155), Expect = 4e-12
 Identities = 50/148 (33%), Positives = 79/148 (53%), Gaps = 14/148 (9%)
 Frame = +3

Query: 171 SSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVACDHELFV-TSLDEDP 347
           SSG  S D+ + GGIP  S+ V+EED +  Y+ VL K+F AEG+  DH +++  S+ E  
Sbjct: 32  SSGSSSFDYYLSGGIPMKSLLVIEEDSMD-YASVLLKFFAAEGLKQDHVIWLGPSIGEMW 90

Query: 348 HKITSELPQPCALPPEDEKALSTD-----------AEKMKIAWRYEGLSQVESSFGS--N 488
            +   +LP     P ++E +   D            E+MKIAWRYE +S+ ++       
Sbjct: 91  FR---QLPGDSDRPNKNENSAGEDNHSSPPSKNPQQERMKIAWRYEQVSKTKAPTLDMIP 147

Query: 489 TNFGHNFDLSRYIDADTIEKSKIQYGTT 572
             + H+FDLS+    + I KS ++Y  +
Sbjct: 148 PGYTHSFDLSK----NLIVKSDMKYAVS 171


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +3

Query: 546 KSKIQYGTTTWQDSTLSWQTTMRRGKLKSALFHKLLRNIYETVLRSSGTNMLRLAIHS 719
           KS +    T   +S LSWQ  ++R  +K  ++HK  +N   ++L  S  N  R  +H+
Sbjct: 9   KSLLIQWLTVESNSLLSWQLHVKRKSIKFDIYHK--KNDTSSLLDGSNKNTDRSILHT 64


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +3

Query: 333 LDEDPHKITSELPQPCALPPEDEKALSTDA--EKMKIAWRYEGLSQVESSFGSNT 491
           L   P  I    PQP   P  DE+ + TD+     K+A   E L Q +S+  S+T
Sbjct: 219 LTVSPSSIQRLSPQPYVRPTSDERPIETDSSVSAPKVANHDEELKQGKSTSPSDT 273


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = +3

Query: 567 TTTWQDSTLSWQTTMRRGKLKSALFHKLLRNIYETVLRSSGTNM 698
           T  WQD    WQ  + R  L++     + +  + + +R+  T++
Sbjct: 591 TNDWQDRATEWQLELERFILENEPMRNIAKRAFTSYVRAYATHL 634


>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 334

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 213 IPAGSIFVVEEDVLGVYSKVLFKYFIAEGVAC 308
           IP+ + + + E  LG +SKVL  Y  AE V+C
Sbjct: 278 IPSATSYDLIEASLGSFSKVLDTYQFAEVVSC 309


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 224 QHFCCRGRCPWCVQQS 271
           QH C RG CP C++ S
Sbjct: 601 QHMCHRGPCPRCLEAS 616


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = +2

Query: 566 YYNLARQYFKLANNYAQREIKKCFVSQIA-----KKYLRNCIKK*RYKHAQTCYTLIGFP 730
           YYN  +Q F+ AN+++   I     SQ       KK LR CI K  YK  +    L    
Sbjct: 677 YYN-GKQSFE-ANSHSSSSIALADPSQFESNKQRKKLLRTCINKFNYKPTRGLKMLSENE 734

Query: 731 YMD 739
           Y+D
Sbjct: 735 YVD 737


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 20/61 (32%), Positives = 24/61 (39%)
 Frame = -2

Query: 687 RYFLIQFRKYFLAICETKHFLISLCA*LFASLKYCLAKL*YHTGFYSFLLCQHQCICSSQ 508
           RY +IQ  + FL+   T HF     A    SL Y    +      Y  L  Q Q   SS 
Sbjct: 405 RYLIIQLIRVFLSGLSTVHFQDFFFADQMVSLTYACGNISLFFCLYKRLWRQPQLCNSSH 464

Query: 507 S 505
           S
Sbjct: 465 S 465


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/41 (24%), Positives = 17/41 (41%)
 Frame = -2

Query: 276 ITLCCTHQGHLPLQQKCCLQVFLHQLYGLRMVYRKIRMVGY 154
           +TLCC H    P   K   +     +  LR  + ++ +  Y
Sbjct: 437 LTLCCKHDFSTPRDVKLSFKAMFFPIAALRQKFWRVMLAQY 477


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -1

Query: 346  GSSSKDVTNNSWSQATPSAMKYLNNTLLYTPRTSSSTTKMLPAG-IPPPTIWSKDG 182
            GS +   T++SW+  T S+    +     TP +SSS +    +  + P T  S  G
Sbjct: 917  GSGTDSATSSSWTAETSSSAITSSVAASVTPTSSSSASSWSSSSEVDPSTAASATG 972


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,251,035
Number of Sequences: 5004
Number of extensions: 72065
Number of successful extensions: 256
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)