Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10n17
(739 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0881 - 25623679-25623843,25624104-25624195,25624287-256244... 54 1e-07
10_06_0187 - 11598240-11599508 33 0.31
02_05_0620 - 30412004-30412429,30412509-30412646,30412729-304128... 32 0.55
09_02_0391 + 8482996-8483216,8484146-8484194,8484559-8487465 31 0.95
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811... 31 1.3
02_04_0221 - 21021886-21022144,21022227-21022345,21022681-210229... 30 1.7
09_04_0158 - 15197667-15198548,15201158-15201598 29 2.9
06_01_0059 - 510856-511499,511595-511805 29 2.9
05_06_0060 - 25266735-25267210,25267323-25267569,25267650-252683... 29 2.9
02_05_0007 + 24918163-24918420,24919360-24919410,24919411-249194... 29 2.9
01_05_0106 + 18160018-18160243,18160423-18160470,18160816-181609... 29 2.9
03_06_0773 + 36167986-36168148,36168325-36168714,36168790-361689... 29 3.9
04_02_0016 + 8557023-8557176,8557277-8557908 29 5.1
01_06_1175 + 35138871-35139009,35139117-35139429,35139791-35140094 29 5.1
12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880... 28 6.7
11_01_0771 + 6453130-6454488 28 6.7
04_04_0348 + 24568834-24568904,24569019-24569148,24569310-245694... 28 6.7
01_05_0548 + 23149271-23149568,23149766-23149845,23150137-231502... 28 8.9
>06_03_0881 -
25623679-25623843,25624104-25624195,25624287-25624446,
25624586-25624668,25624845-25624913,25625480-25625555,
25625645-25625895,25626387-25626537
Length = 348
Score = 54.0 bits (124), Expect = 1e-07
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Frame = +3
Query: 153 NNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVACDHELFVTS 332
N +VSSGIP LD I+GGG GS+ ++ ED + +L + F+A+GV L
Sbjct: 37 NGAAFVSSGIPDLDRILGGGFLIGSVVMIMEDSDAPHHLLLLRSFMAQGVVHKQPLLFAG 96
Query: 333 LDEDPHKITSELPQPCALPPEDEK------ALSTDA----EKMKIAWRYE 452
++P LP A ED + S+D E ++IAW+Y+
Sbjct: 97 PMKEPRLFLGTLP-AVASSKEDGRQRGMGAGTSSDGRTSDEALRIAWQYK 145
>10_06_0187 - 11598240-11599508
Length = 422
Score = 32.7 bits (71), Expect = 0.31
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +3
Query: 324 VTSLDEDPHKITSELPQPCALPPEDEKALSTDAEKMKIAWRYEGL-SQVESSFGS-NTNF 497
+T L E H + P+P A P+D + LS E+ + YE + + +S + +T
Sbjct: 79 LTKLSELKHAYREKNPKPVAATPQDARLLSEIQEQQNLLKTYEVMVKKFQSQIQTRDTEI 138
Query: 498 GHNFDLSRYIDADTIEKSKIQ 560
H L + ID + KSK++
Sbjct: 139 TH---LQQQIDEAKLRKSKLE 156
>02_05_0620 -
30412004-30412429,30412509-30412646,30412729-30412866,
30412966-30413139,30413211-30413684,30413775-30413917,
30414002-30414160,30414943-30415042
Length = 583
Score = 31.9 bits (69), Expect = 0.55
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +3
Query: 102 FRKFIDISTHINGTKVKNNLPYVSSGIPSLDHIVGGGIPAGS 227
FR ++ I+G + K L YV SG+ S +V GG AGS
Sbjct: 387 FRTGVEQGPQIDGEQFKKILQYVKSGVDSGATLVAGGDRAGS 428
>09_02_0391 + 8482996-8483216,8484146-8484194,8484559-8487465
Length = 1058
Score = 31.1 bits (67), Expect = 0.95
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +3
Query: 258 VYSKVLFKYFIAEGVACDHELFVTSLDEDPHKITSELPQPCALPPEDEKALSTDAEKMKI 437
+ + + + +IAEG + L V +E+ + EL C L PEDE T A+ + +
Sbjct: 407 IEKQCIMQQWIAEGFFSEVPLQVQ--EEEAERCYQELIDRCLLLPEDEAHGVTGAKMLNL 464
Query: 438 AWRYEGLSQVESSFGSN-TNFGHNF 509
+ + ++ SN N G NF
Sbjct: 465 FRSFAIYRSQDENYVSNPRNIGRNF 489
>04_04_0214 - 23674270-23676858,23677574-23680843,23680941-23681119,
23681200-23681559,23681645-23682086,23682199-23682332,
23682479-23682680
Length = 2391
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -1
Query: 595 LKVLSCQVVVPY-WILLFSIVSASMYLL-KSKLCPKLVLLPNDDSTW 461
L LS V+ P WI S+ S S+ +L KS L P VL+P D S W
Sbjct: 1347 LSYLSSLVMAPIVWIFYISLTSLSLSILGKSFLQPNYVLIP-DVSIW 1392
>02_04_0221 -
21021886-21022144,21022227-21022345,21022681-21022920,
21023064-21023171,21023272-21023331,21023991-21024066,
21024155-21024360,21024722-21024784,21024925-21025012,
21025515-21026015,21027206-21027603
Length = 705
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 563 WY-YNLARQYFKLANNYAQREIKKCFVSQIAKKYLRNCIKK*RYKHAQTCYTLIGFPYM 736
WY Y FK+AN+ EI CF S+ K +L C+K+ + +L+G P++
Sbjct: 495 WYPYEDVAAIFKIANSKDIPEIPDCF-SKEGKDFLSLCLKRDPVQRPSAA-SLLGHPFV 551
>09_04_0158 - 15197667-15198548,15201158-15201598
Length = 440
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 310 SQATPSAMKYLNNTLLYTPRTSSSTTKMLPAGIPPP 203
S+ATP +L+N L P+T + PA PPP
Sbjct: 14 SEATPQHALWLSNLDLAVPKTHTPLVYYYPAPSPPP 49
>06_01_0059 - 510856-511499,511595-511805
Length = 284
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 535 SASMYLLKSKLCPKLVLLPNDDSTWLKP 452
S S+ + + LCP LPNDD W P
Sbjct: 121 SPSVVITGTNLCPPNWYLPNDDGGWCNP 148
>05_06_0060 -
25266735-25267210,25267323-25267569,25267650-25268345,
25268457-25268709,25268786-25269261,25270760-25270909
Length = 765
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/71 (22%), Positives = 33/71 (46%)
Frame = +3
Query: 456 LSQVESSFGSNTNFGHNFDLSRYIDADTIEKSKIQYGTTTWQDSTLSWQTTMRRGKLKSA 635
L + E S+ S N H+ ++ + AD + +++D +SW +RR ++ +
Sbjct: 450 LCEKEISYSSAVNLPHSLEMLLELVADKNRSVVLAVAGASYRDMLMSWVCRLRRLRVTNF 509
Query: 636 LFHKLLRNIYE 668
+ L + YE
Sbjct: 510 VVCALDQETYE 520
>02_05_0007 +
24918163-24918420,24919360-24919410,24919411-24919480,
24919645-24919830,24920127-24920275,24921310-24921417,
24921501-24921638,24922574-24922853,24922924-24923047,
24923197-24923312,24923612-24923619
Length = 495
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +2
Query: 119 YKYAYKWHKSEK*PTIRIFRYTI--LRPYSWW 208
Y A KW EK +R+ YT+ L+P+ WW
Sbjct: 233 YMLANKWMVDEK--ELRVIHYTLGPLKPWDWW 262
>01_05_0106 +
18160018-18160243,18160423-18160470,18160816-18160974,
18162056-18162219,18162778-18162885,18163695-18163865,
18163945-18164478,18164574-18164648,18164724-18164852,
18164975-18165049,18165129-18165338,18165529-18165681,
18165763-18165986,18166305-18166422,18166518-18166656,
18166745-18166946,18166981-18167149,18167190-18167267,
18167268-18167408,18167717-18167819,18169024-18169324,
18169450-18169518,18169602-18169626,18170946-18170975
Length = 1216
Score = 29.5 bits (63), Expect = 2.9
Identities = 25/101 (24%), Positives = 45/101 (44%)
Frame = +3
Query: 258 VYSKVLFKYFIAEGVACDHELFVTSLDEDPHKITSELPQPCALPPEDEKALSTDAEKMKI 437
+ SK+ + +AEG DHE +SL+ P E C+ E+ ++ +K
Sbjct: 363 ITSKLASEVSLAEGKKKDHENMESSLEGSP---GPEAEVSCS-TAENSGYGTSGEDKSGT 418
Query: 438 AWRYEGLSQVESSFGSNTNFGHNFDLSRYIDADTIEKSKIQ 560
+E LS + GS + G + +S Y+ D + K++
Sbjct: 419 NTCFEDLSVNGNLHGSGNSQGDSDSISVYLTDDKVHTEKVE 459
>03_06_0773 +
36167986-36168148,36168325-36168714,36168790-36168965,
36169953-36170071,36170156-36170441
Length = 377
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -1
Query: 205 PTIWSKDGIPEDTYGR-LFFTFVPFICVLISINFRKLRIFY*YIKPI-SAKY 56
P+ WS G + LF+ +C++ IN + R F+ Y PI SAKY
Sbjct: 147 PSYWSSAGHFDPAVPECLFYRLRSDLCLVQQINIQPFRAFFQYGDPIYSAKY 198
>04_02_0016 + 8557023-8557176,8557277-8557908
Length = 261
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -1
Query: 547 FSIVSASMYLLKSKLCPKLVLLPNDDSTWLKP 452
F I S+ + + LCP LPND W P
Sbjct: 99 FCISGTSVTITATNLCPPNYALPNDAGGWCNP 130
>01_06_1175 + 35138871-35139009,35139117-35139429,35139791-35140094
Length = 251
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 529 SMYLLKSKLCPKLVLLPNDDSTWLKP 452
S+ + + LCP LPNDD W P
Sbjct: 97 SVTVTATNLCPPNYALPNDDGGWCNP 122
>12_01_0906 +
8799284-8799441,8800865-8801690,8801933-8802055,
8802144-8802210,8802611-8802714,8802798-8802900,
8803103-8803401,8804009-8804263,8805471-8805776,
8805866-8806194,8806829-8806916,8807027-8807164,
8807438-8807458
Length = 938
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 566 YYNLARQYFKLANNYAQREIKKCFVSQ 646
YY L Q F + N Q +KCFV Q
Sbjct: 665 YYGLLGQRFCMINKVYQENFEKCFVQQ 691
>11_01_0771 + 6453130-6454488
Length = 452
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -1
Query: 259 TPRTSSSTTKMLPAGIPPPTI 197
T +++ T+MLP+G+PPP +
Sbjct: 400 TVAAAATMTRMLPSGVPPPPV 420
>04_04_0348 +
24568834-24568904,24569019-24569148,24569310-24569459,
24569546-24569650,24569808-24570029,24570162-24570274,
24570371-24570470,24571125-24571325,24571401-24571549,
24571624-24571765,24571851-24571991,24572098-24572286,
24572622-24572835,24573198-24573291,24573671-24573905,
24574242-24574433,24574919-24575017,24575443-24575532,
24575709-24575912,24575994-24576269,24576974-24577096,
24577453-24577608,24577686-24577802,24577878-24577957,
24578173-24578377,24578485-24578687,24578882-24578933
Length = 1350
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -2
Query: 654 LAICETKHFLISLCA*LFASLKYCLAKL*YHTGFYSFLLCQHQCICSSQSYV 499
L C T H + C F LK L ++ GF++ +L +CIC S S V
Sbjct: 73 LGECSTCHGSFAECPGHFGYLKLALPV--FNVGFFNCILDVLKCICKSCSRV 122
>01_05_0548 +
23149271-23149568,23149766-23149845,23150137-23150223,
23150421-23150729,23150774-23150899,23151977-23152360,
23152603-23152608
Length = 429
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = -1
Query: 334 KDVTNNSWSQATPSAMKYLNNTLLYTPRTSSSTTKMLPAGIPPPTIWSKDGIPEDTYGRL 155
K V WS TP Y ++ + K+ P T++ K+GIP+ ++
Sbjct: 92 KTVATIDWSMKTPRLQYYTSSMVDDVFTRLGEDIKVKPWA---HTVYGKNGIPDVQLDKI 148
Query: 154 FFTFVP 137
++F+P
Sbjct: 149 DYSFIP 154
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,641,205
Number of Sequences: 37544
Number of extensions: 417233
Number of successful extensions: 1330
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1330
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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