Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10n17
(739 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11546| Best HMM Match : DUF1407 (HMM E-Value=1.2) 31 0.74
SB_1024| Best HMM Match : Ank (HMM E-Value=0) 31 1.3
SB_34340| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41) 29 3.0
SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4) 29 5.2
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 29 5.2
SB_51477| Best HMM Match : Coat_X (HMM E-Value=2.7) 29 5.2
SB_51250| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_8923| Best HMM Match : wnt (HMM E-Value=2.5e-22) 29 5.2
SB_59600| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.5e-05) 28 6.9
SB_49098| Best HMM Match : Peptidase_M14 (HMM E-Value=4.5e-12) 28 6.9
SB_1560| Best HMM Match : Glyco_hydro_67C (HMM E-Value=8.4) 28 9.1
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24) 28 9.1
SB_25452| Best HMM Match : CTF_NFI (HMM E-Value=1.2) 28 9.1
SB_23584| Best HMM Match : RVT_1 (HMM E-Value=0.0029) 28 9.1
SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6) 28 9.1
>SB_11546| Best HMM Match : DUF1407 (HMM E-Value=1.2)
Length = 367
Score = 31.5 bits (68), Expect = 0.74
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 384 LPPEDEKALSTDAEKMKIAWRYEGL--SQVESSFGSNTNFGHNFDLSRYIDADTIEKSK 554
LP ED+KAL++ +++ I WR S + TN NF + R I D ++ +
Sbjct: 16 LPQEDDKALASRVKELSIQWRAWACYRSSLPREEAECTNASCNFKVKRLIFLDDADEDR 74
>SB_1024| Best HMM Match : Ank (HMM E-Value=0)
Length = 891
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Frame = +3
Query: 333 LDEDPHKITSELPQPCALPPEDEKAL----STDAEKM-KIAWRYEGLSQVESSFGSNTNF 497
L++D H++ E + +PP E A+ S D + + + + YE S E+S +T F
Sbjct: 522 LNKDHHELEEECAESTDMPPNTEAAIMMVFSEDCDDIAQRKYSYESTS--ENSGNLSTIF 579
Query: 498 GHNFDLSR 521
H+F LSR
Sbjct: 580 EHSFILSR 587
>SB_34340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = -2
Query: 633 HFLISLCA*LFASLKYCLAKL*YHTGFYSFLLCQHQCICSSQSYV 499
H++++ + +S +Y ++ Y +++C QC+ SS YV
Sbjct: 51 HYVVTSAQYVVSSAQYVVSSAQYVVSSAQYVVCSAQCVVSSAQYV 95
>SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41)
Length = 342
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Frame = +3
Query: 576 WQDSTLSWQTTMRRGKLKSALFHKLLRNIYETVLRSSGTNM------LRLAIHSLGSPIW 737
W D+ L+W T G + L KL+ +VL S+ +M +RL I+S G +W
Sbjct: 47 WNDTRLAWNETEYGGIKQMTLRSKLIWTPDISVLNSANKDMDLREKNIRLFINSAGEVLW 106
>SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1388
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 165 YVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKV 272
YVS I D + GI +F+V +D++ V+ K+
Sbjct: 1175 YVSEPIEYFDLLTNDGIEVNDVFIVSDDLIQVHYKL 1210
>SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)
Length = 435
Score = 28.7 bits (61), Expect = 5.2
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = -2
Query: 456 SLHISRLFSFFLHQYLVLFHLLEVKHMVEGVLMLF 352
++H S LF++ +H Y + + + H+V ++ L+
Sbjct: 224 TIHFSPLFTYLIHLYPISYRTIHFSHLVTYLIHLY 258
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -3
Query: 620 PSAHSCLPA*STVLPSCSTIL 558
P+ HS LPA TVLPS T+L
Sbjct: 566 PALHSVLPALHTVLPSLHTLL 586
>SB_51477| Best HMM Match : Coat_X (HMM E-Value=2.7)
Length = 320
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +3
Query: 99 SFRKFIDISTHINGTKVKNN-LPYVSSGIPSL 191
+F+KF THI G ++K+N +SSG+P +
Sbjct: 12 NFKKFAIFITHIFGKQIKDNRYTNISSGLPEV 43
>SB_51250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 264 SKVLFKYFIAEGVACDHELFVTSLDED-PHKITSELPQPCALPPEDEKAL 410
S +F F +A L V DED H+I + LP C PPE ++ L
Sbjct: 266 SAYMFSSFCVASIAWVRPLVVILCDEDYKHEIQALLP--CCKPPESQRHL 313
>SB_8923| Best HMM Match : wnt (HMM E-Value=2.5e-22)
Length = 153
Score = 28.7 bits (61), Expect = 5.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 218 CRQHFCCRGRCPWCVQQSVI 277
CR H+CC RC C ++ V+
Sbjct: 130 CRFHWCCEVRCKKCKKERVV 149
>SB_59600| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.5e-05)
Length = 1119
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 165 YVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKY 284
YVS I D +V + +F+V +D++ V+ K+ K+
Sbjct: 907 YVSEPIEYFDLLVNDSVEVNDVFIVNDDLIQVHYKLGEKF 946
>SB_49098| Best HMM Match : Peptidase_M14 (HMM E-Value=4.5e-12)
Length = 290
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 183 PSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGV 302
P L + G +P SI V ++ L YS+ L +F+A +
Sbjct: 124 PGLSDLYGFFLPPSSIIPVGKETLQDYSECLNSFFVANNI 163
>SB_1560| Best HMM Match : Glyco_hydro_67C (HMM E-Value=8.4)
Length = 296
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +3
Query: 243 EDVLGVYSKVLFKYFIAEGVACDHELFVTSLDEDPHKITSELPQPCALPPEDEKALSTDA 422
EDV+G + VL+K G E+F T EDP ++ + P L P + D
Sbjct: 232 EDVVGHDASVLWKTVSLNGKRRVVEVFPTDNTEDPPRVFPK-PPTVVLTPGKRPEIPEDV 290
Query: 423 EKMKIA 440
+ K A
Sbjct: 291 KGSKTA 296
>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
Length = 652
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -1
Query: 310 SQATPSAMKYLNNTLLYTPRTSSSTTKMLPAGIPPPTIWSKDGI 179
S A PS N ++ T TS TK P IPP T KDG+
Sbjct: 542 STAQPSVSTTKPNDVVKTHMTSV-VTKPKPTSIPPTTGSPKDGV 584
>SB_25452| Best HMM Match : CTF_NFI (HMM E-Value=1.2)
Length = 1056
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -1
Query: 340 SSKDVTNNSWSQATPSAMKYLNNTLLYTPRTSSSTTKMLPAGIPPPTI 197
S+KDV + SW+ P A+ NN + S + K L P I
Sbjct: 838 STKDVQDRSWAHNAPDAIDDANNVEKVLGKASPAARKKLVLHATPEQI 885
>SB_23584| Best HMM Match : RVT_1 (HMM E-Value=0.0029)
Length = 511
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 187 DGIPEDTYGRLFFTFVPFICVLISINFRKLRI 92
DGIP + F F PF+ L + + R+ RI
Sbjct: 170 DGIPNKVWSLFAFEFAPFVAELYNSSLRQGRI 201
>SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
Length = 493
Score = 27.9 bits (59), Expect = 9.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 200 SWWRNTCRQHFCCRG 244
+WW NTC H C+G
Sbjct: 154 TWWDNTCTSHSKCQG 168
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,490,928
Number of Sequences: 59808
Number of extensions: 509585
Number of successful extensions: 1537
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1525
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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