Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10n17
(739 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83307-7|CAM13057.1| 531|Homo sapiens elongation protein 4 homo... 121 3e-27
Z83307-6|CAM13056.1| 424|Homo sapiens elongation protein 4 homo... 121 3e-27
Z83001-1|CAM28371.1| 531|Homo sapiens elongation protein 4 homo... 121 3e-27
BC012514-1|AAH12514.1| 535|Homo sapiens ELP4 protein protein. 121 3e-27
AK000505-1|BAA91212.1| 424|Homo sapiens protein ( Homo sapiens ... 121 3e-27
BC000246-1|AAH00246.2| 1393|Homo sapiens RNA polymerase II assoc... 31 3.3
AK022794-1|BAB14247.1| 772|Homo sapiens protein ( Homo sapiens ... 31 3.3
AB037824-1|BAA92641.1| 1337|Homo sapiens KIAA1403 protein protein. 31 3.3
BC146760-1|AAI46761.1| 1393|Homo sapiens RAB3 GTPase activating ... 30 10.0
AL445435-3|CAI15808.1| 1393|Homo sapiens rab3 GTPase-activating ... 30 10.0
AF255648-1|AAG44636.1| 1393|Homo sapiens rGAP-iso protein. 30 10.0
AF004828-1|AAC35881.1| 1393|Homo sapiens rab3-GAP regulatory dom... 30 10.0
AB020646-1|BAA74862.2| 1393|Homo sapiens KIAA0839 protein protein. 30 10.0
>Z83307-7|CAM13057.1| 531|Homo sapiens elongation protein 4 homolog
(S. cerevisiae) protein.
Length = 531
Score = 121 bits (291), Expect = 3e-27
Identities = 81/220 (36%), Positives = 117/220 (53%), Gaps = 18/220 (8%)
Frame = +3
Query: 132 INGTK--VKNNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVA 305
I GT+ V+N VS+G+P+LD ++GGG+ G++ ++EED +YS +LFKYF+AEG+
Sbjct: 49 IAGTRPSVRNGQLLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIV 108
Query: 306 CDHELFVTSLDEDPHKITSELPQPCALPPEDEKALSTDAE---------KMKIAWRYEGL 458
H L V S EDP I ELP P L + +K D KMKIAWRY+ L
Sbjct: 109 NGHTLLVASAKEDPANILQELPAP-LLDDKCKKEFDEDVYNHKTPESNIKMKIAWRYQLL 167
Query: 459 SQVESSFGSNTNFGHNFDLSRYIDADTIEKSKIQ-YGTTTWQDSTLSWQ-TTMRRGKLKS 632
++E S++ FGH +D S+ + + IE S + STL + ++ G K
Sbjct: 168 PKMEIGPVSSSRFGHYYDASKRMPQELIEASNWHGFFLPEKISSTLKVEPCSLTPGYTK- 226
Query: 633 ALFHKLLRNIYETVLRSSG-----TNMLRLAIHSLGSPIW 737
L + IYE S N+LR+ I +LGSP+W
Sbjct: 227 -LLQFIQNIIYEEGFDGSNPQKKQRNILRIGIQNLGSPLW 265
>Z83307-6|CAM13056.1| 424|Homo sapiens elongation protein 4 homolog
(S. cerevisiae) protein.
Length = 424
Score = 121 bits (291), Expect = 3e-27
Identities = 81/220 (36%), Positives = 117/220 (53%), Gaps = 18/220 (8%)
Frame = +3
Query: 132 INGTK--VKNNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVA 305
I GT+ V+N VS+G+P+LD ++GGG+ G++ ++EED +YS +LFKYF+AEG+
Sbjct: 49 IAGTRPSVRNGQLLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIV 108
Query: 306 CDHELFVTSLDEDPHKITSELPQPCALPPEDEKALSTDAE---------KMKIAWRYEGL 458
H L V S EDP I ELP P L + +K D KMKIAWRY+ L
Sbjct: 109 NGHTLLVASAKEDPANILQELPAP-LLDDKCKKEFDEDVYNHKTPESNIKMKIAWRYQLL 167
Query: 459 SQVESSFGSNTNFGHNFDLSRYIDADTIEKSKIQ-YGTTTWQDSTLSWQ-TTMRRGKLKS 632
++E S++ FGH +D S+ + + IE S + STL + ++ G K
Sbjct: 168 PKMEIGPVSSSRFGHYYDASKRMPQELIEASNWHGFFLPEKISSTLKVEPCSLTPGYTK- 226
Query: 633 ALFHKLLRNIYETVLRSSG-----TNMLRLAIHSLGSPIW 737
L + IYE S N+LR+ I +LGSP+W
Sbjct: 227 -LLQFIQNIIYEEGFDGSNPQKKQRNILRIGIQNLGSPLW 265
>Z83001-1|CAM28371.1| 531|Homo sapiens elongation protein 4 homolog
(S. cerevisiae) protein.
Length = 531
Score = 121 bits (291), Expect = 3e-27
Identities = 81/220 (36%), Positives = 117/220 (53%), Gaps = 18/220 (8%)
Frame = +3
Query: 132 INGTK--VKNNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVA 305
I GT+ V+N VS+G+P+LD ++GGG+ G++ ++EED +YS +LFKYF+AEG+
Sbjct: 49 IAGTRPSVRNGQLLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIV 108
Query: 306 CDHELFVTSLDEDPHKITSELPQPCALPPEDEKALSTDAE---------KMKIAWRYEGL 458
H L V S EDP I ELP P L + +K D KMKIAWRY+ L
Sbjct: 109 NGHTLLVASAKEDPANILQELPAP-LLDDKCKKEFDEDVYNHKTPESNIKMKIAWRYQLL 167
Query: 459 SQVESSFGSNTNFGHNFDLSRYIDADTIEKSKIQ-YGTTTWQDSTLSWQ-TTMRRGKLKS 632
++E S++ FGH +D S+ + + IE S + STL + ++ G K
Sbjct: 168 PKMEIGPVSSSRFGHYYDASKRMPQELIEASNWHGFFLPEKISSTLKVEPCSLTPGYTK- 226
Query: 633 ALFHKLLRNIYETVLRSSG-----TNMLRLAIHSLGSPIW 737
L + IYE S N+LR+ I +LGSP+W
Sbjct: 227 -LLQFIQNIIYEEGFDGSNPQKKQRNILRIGIQNLGSPLW 265
>BC012514-1|AAH12514.1| 535|Homo sapiens ELP4 protein protein.
Length = 535
Score = 121 bits (291), Expect = 3e-27
Identities = 81/220 (36%), Positives = 117/220 (53%), Gaps = 18/220 (8%)
Frame = +3
Query: 132 INGTK--VKNNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVA 305
I GT+ V+N VS+G+P+LD ++GGG+ G++ ++EED +YS +LFKYF+AEG+
Sbjct: 49 IAGTRPSVRNGQLLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIV 108
Query: 306 CDHELFVTSLDEDPHKITSELPQPCALPPEDEKALSTDAE---------KMKIAWRYEGL 458
H L V S EDP I ELP P L + +K D KMKIAWRY+ L
Sbjct: 109 NGHTLLVASAKEDPANILQELPAP-LLDDKCKKEFDEDVYNHKTPESNIKMKIAWRYQLL 167
Query: 459 SQVESSFGSNTNFGHNFDLSRYIDADTIEKSKIQ-YGTTTWQDSTLSWQ-TTMRRGKLKS 632
++E S++ FGH +D S+ + + IE S + STL + ++ G K
Sbjct: 168 PKMEIGPVSSSRFGHYYDASKRMPQELIEASNWHGFFLPEKISSTLKVEPCSLTPGYTK- 226
Query: 633 ALFHKLLRNIYETVLRSSG-----TNMLRLAIHSLGSPIW 737
L + IYE S N+LR+ I +LGSP+W
Sbjct: 227 -LLQFIQNIIYEEGFDGSNPQKKQRNILRIGIQNLGSPLW 265
>AK000505-1|BAA91212.1| 424|Homo sapiens protein ( Homo sapiens
cDNA FLJ20498 fis, clone KAT08960. ).
Length = 424
Score = 121 bits (291), Expect = 3e-27
Identities = 81/220 (36%), Positives = 117/220 (53%), Gaps = 18/220 (8%)
Frame = +3
Query: 132 INGTK--VKNNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGVA 305
I GT+ V+N VS+G+P+LD ++GGG+ G++ ++EED +YS +LFKYF+AEG+
Sbjct: 49 IAGTRPSVRNGQLLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIV 108
Query: 306 CDHELFVTSLDEDPHKITSELPQPCALPPEDEKALSTDAE---------KMKIAWRYEGL 458
H L V S EDP I ELP P L + +K D KMKIAWRY+ L
Sbjct: 109 NGHTLLVASAKEDPANILQELPAP-LLDDKCKKEFDEDVYNHKTPESNIKMKIAWRYQLL 167
Query: 459 SQVESSFGSNTNFGHNFDLSRYIDADTIEKSKIQ-YGTTTWQDSTLSWQ-TTMRRGKLKS 632
++E S++ FGH +D S+ + + IE S + STL + ++ G K
Sbjct: 168 PKMEIGPVSSSRFGHYYDASKRMPQELIEASNWHGFFLPEKISSTLKVEPCSLTPGYTK- 226
Query: 633 ALFHKLLRNIYETVLRSSG-----TNMLRLAIHSLGSPIW 737
L + IYE S N+LR+ I +LGSP+W
Sbjct: 227 -LLQFIQNIIYEEGFDGSNPQKKQRNILRIGIQNLGSPLW 265
>BC000246-1|AAH00246.2| 1393|Homo sapiens RNA polymerase II
associated protein 1 protein.
Length = 1393
Score = 31.5 bits (68), Expect = 3.3
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +3
Query: 351 KITSELPQPCALPPEDEKALSTDAEKM 431
+I +E PQ ALPPE+ + LST+A ++
Sbjct: 651 RIIAEAPQELALPPEEAEMLSTEALRL 677
>AK022794-1|BAB14247.1| 772|Homo sapiens protein ( Homo sapiens
cDNA FLJ12732 fis, clone NT2RP2000175. ).
Length = 772
Score = 31.5 bits (68), Expect = 3.3
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +3
Query: 351 KITSELPQPCALPPEDEKALSTDAEKM 431
+I +E PQ ALPPE+ + LST+A ++
Sbjct: 30 RIIAEAPQELALPPEEAEMLSTEALRL 56
>AB037824-1|BAA92641.1| 1337|Homo sapiens KIAA1403 protein protein.
Length = 1337
Score = 31.5 bits (68), Expect = 3.3
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +3
Query: 351 KITSELPQPCALPPEDEKALSTDAEKM 431
+I +E PQ ALPPE+ + LST+A ++
Sbjct: 673 RIIAEAPQELALPPEEAEMLSTEALRL 699
>BC146760-1|AAI46761.1| 1393|Homo sapiens RAB3 GTPase activating
protein subunit 2 (non-catalytic) protein.
Length = 1393
Score = 29.9 bits (64), Expect = 10.0
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 396 DEKALSTDAEKMKIAWRYEGLSQVES-SFGSNTNFGHNFDLSRYIDADTIEKSKIQ 560
DE L A K+K+ YE +SQ+ S F +T F N DL+ + D E K+Q
Sbjct: 629 DEGLLQFCANKLKLLQLYESVSQLNSLDFHLDTPFSDN-DLALLLRLDEKELLKLQ 683
>AL445435-3|CAI15808.1| 1393|Homo sapiens rab3 GTPase-activating
protein, non-catalytic subunit (RAB3-GAP150) protein.
Length = 1393
Score = 29.9 bits (64), Expect = 10.0
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 396 DEKALSTDAEKMKIAWRYEGLSQVES-SFGSNTNFGHNFDLSRYIDADTIEKSKIQ 560
DE L A K+K+ YE +SQ+ S F +T F N DL+ + D E K+Q
Sbjct: 629 DEGLLQFCANKLKLLQLYESVSQLNSLDFHLDTPFSDN-DLALLLRLDEKELLKLQ 683
>AF255648-1|AAG44636.1| 1393|Homo sapiens rGAP-iso protein.
Length = 1393
Score = 29.9 bits (64), Expect = 10.0
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 396 DEKALSTDAEKMKIAWRYEGLSQVES-SFGSNTNFGHNFDLSRYIDADTIEKSKIQ 560
DE L A K+K+ YE +SQ+ S F +T F N DL+ + D E K+Q
Sbjct: 629 DEGLLQFCANKLKLLQLYESVSQLNSLDFHLDTPFSDN-DLALLLRLDEKELLKLQ 683
>AF004828-1|AAC35881.1| 1393|Homo sapiens rab3-GAP regulatory domain
protein.
Length = 1393
Score = 29.9 bits (64), Expect = 10.0
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 396 DEKALSTDAEKMKIAWRYEGLSQVES-SFGSNTNFGHNFDLSRYIDADTIEKSKIQ 560
DE L A K+K+ YE +SQ+ S F +T F N DL+ + D E K+Q
Sbjct: 629 DEGLLQFCANKLKLLQLYESVSQLNSLDFHLDTPFSDN-DLALLLRLDEKELLKLQ 683
>AB020646-1|BAA74862.2| 1393|Homo sapiens KIAA0839 protein protein.
Length = 1393
Score = 29.9 bits (64), Expect = 10.0
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 396 DEKALSTDAEKMKIAWRYEGLSQVES-SFGSNTNFGHNFDLSRYIDADTIEKSKIQ 560
DE L A K+K+ YE +SQ+ S F +T F N DL+ + D E K+Q
Sbjct: 629 DEGLLQFCANKLKLLQLYESVSQLNSLDFHLDTPFSDN-DLALLLRLDEKELLKLQ 683
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,541,852
Number of Sequences: 237096
Number of extensions: 2424596
Number of successful extensions: 10036
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10023
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8791154398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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