Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n17
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41559-3|AAC24262.1|  334|Caenorhabditis elegans Hypothetical pr...    72   4e-13
U41278-3|AAK31512.1|  453|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AL023838-7|CAE47473.1|  357|Caenorhabditis elegans Hypothetical ...    30   2.0  
AL023838-6|CAB61038.2|  395|Caenorhabditis elegans Hypothetical ...    30   2.0  
AF061201-1|AAD10194.1|  357|Caenorhabditis elegans RAD51 short i...    30   2.0  
AB011382-1|BAA24982.1|  357|Caenorhabditis elegans RecA/Rad51/Dm...    30   2.0  
U40060-3|AAA81142.2|  974|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AY077615-1|AAL79359.1|  510|Caenorhabditis elegans KSR-2b protein.     29   4.5  
AY077614-1|AAL79358.1|  550|Caenorhabditis elegans KSR-2a protein.     29   4.5  
AL137227-5|CAB70240.2|  510|Caenorhabditis elegans Hypothetical ...    29   4.5  
AL137227-4|CAB70239.2|  550|Caenorhabditis elegans Hypothetical ...    29   4.5  
AC087794-1|AAG53701.2|  304|Caenorhabditis elegans Hypothetical ...    29   4.5  
U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z93395-5|CAE18034.1|  519|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z83112-6|CAE17883.1|  519|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AL132898-4|CAC14407.3|  968|Caenorhabditis elegans Hypothetical ...    28   7.9  

>U41559-3|AAC24262.1|  334|Caenorhabditis elegans Hypothetical
           protein C26B2.6 protein.
          Length = 334

 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 4/145 (2%)
 Frame = +3

Query: 123 STHINGTKVKNNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSKVLFKYFIAEGV 302
           S  I G   K  L   SSG  S D ++GG +   SI +++E     Y   L + F+AEG+
Sbjct: 7   SVQIAGCSTKKRLLETSSGCDSFDTLIGGALVNSSIVLIDEYRSRCYGSYLIRSFLAEGL 66

Query: 303 ACDHELFVTSLDEDPHKIT---SELPQPCALPPEDEKALSTDAE-KMKIAWRYEGLSQVE 470
              H  F+    EDP +I    S          E   +L  + E  MKIAWRY  + QV 
Sbjct: 67  HHGHRCFIADPTEDPKEINLIPSRRTSTDMQNQEIPNSLPAENENSMKIAWRYGNVKQVS 126

Query: 471 SSFGSNTNFGHNFDLSRYIDADTIE 545
           SS G  +N  + +D +++++   ++
Sbjct: 127 SSLGPLSN-ENQYDFTKHVENPNVD 150


>U41278-3|AAK31512.1|  453|Caenorhabditis elegans Hypothetical
           protein F33G12.4 protein.
          Length = 453

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = +3

Query: 114 IDISTHINGTKVKNNL----PYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLG 257
           I +  ++N   V NNL    PYV S IPS++H+   GI A    V  E+ +G
Sbjct: 266 IGVLQNLNTIDVSNNLMTALPYVFSKIPSIEHV---GINANDQMVRLEEEIG 314


>AL023838-7|CAE47473.1|  357|Caenorhabditis elegans Hypothetical
           protein Y43C5A.6b protein.
          Length = 357

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +3

Query: 93  MRSFRKFIDISTHINGTKV---KNNLPYVSSGIPSLDHIVGGGIPAGSI 230
           M+   KF+ +     G +V   ++ L  + +G  SLD ++GGGI  GSI
Sbjct: 91  MKEAMKFVQMG-FTTGAEVHVKRSQLVQIRTGSASLDRLLGGGIETGSI 138


>AL023838-6|CAB61038.2|  395|Caenorhabditis elegans Hypothetical
           protein Y43C5A.6a protein.
          Length = 395

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +3

Query: 93  MRSFRKFIDISTHINGTKV---KNNLPYVSSGIPSLDHIVGGGIPAGSI 230
           M+   KF+ +     G +V   ++ L  + +G  SLD ++GGGI  GSI
Sbjct: 129 MKEAMKFVQMG-FTTGAEVHVKRSQLVQIRTGSASLDRLLGGGIETGSI 176


>AF061201-1|AAD10194.1|  357|Caenorhabditis elegans RAD51 short
           isoform protein.
          Length = 357

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +3

Query: 93  MRSFRKFIDISTHINGTKV---KNNLPYVSSGIPSLDHIVGGGIPAGSI 230
           M+   KF+ +     G +V   ++ L  + +G  SLD ++GGGI  GSI
Sbjct: 91  MKEAMKFVQMG-FTTGAEVHVKRSQLVQIRTGSASLDRLLGGGIETGSI 138


>AB011382-1|BAA24982.1|  357|Caenorhabditis elegans
           RecA/Rad51/Dmc1-like protein protein.
          Length = 357

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +3

Query: 93  MRSFRKFIDISTHINGTKV---KNNLPYVSSGIPSLDHIVGGGIPAGSI 230
           M+   KF+ +     G +V   ++ L  + +G  SLD ++GGGI  GSI
Sbjct: 91  MKEAMKFVQMG-FTTGAEVHVKRSQLVQIRTGSASLDRLLGGGIETGSI 138


>U40060-3|AAA81142.2|  974|Caenorhabditis elegans Hypothetical
           protein F38B6.4 protein.
          Length = 974

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = +3

Query: 132 INGTK--VKNNLPYVSSG-IPSLDHIVGGGIPAGSIFVVEED 248
           + GTK  VK  LP +S+G +    HI GGG+   +I V++++
Sbjct: 644 LRGTKLYVKKVLPLLSTGLVKGCAHITGGGLTENAIRVLDKN 685


>AY077615-1|AAL79359.1|  510|Caenorhabditis elegans KSR-2b protein.
          Length = 510

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -1

Query: 319 NSWSQATPSAMKYLNNTLLYTPRTSSSTTKMLPAGIPPPTIWSKDGIPEDT 167
           +SW +++ S     ++       TSSS T   P   PPPT  S   +   T
Sbjct: 19  SSWRRSSTSGSISQSSRTTSKTTTSSSVTSSNPINAPPPTATSSSSVLPST 69


>AY077614-1|AAL79358.1|  550|Caenorhabditis elegans KSR-2a protein.
          Length = 550

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -1

Query: 319 NSWSQATPSAMKYLNNTLLYTPRTSSSTTKMLPAGIPPPTIWSKDGIPEDT 167
           +SW +++ S     ++       TSSS T   P   PPPT  S   +   T
Sbjct: 23  SSWRRSSTSGSISQSSRTTSKTTTSSSVTSSNPINAPPPTATSSSSVLPST 73


>AL137227-5|CAB70240.2|  510|Caenorhabditis elegans Hypothetical
           protein F58D5.4b protein.
          Length = 510

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -1

Query: 319 NSWSQATPSAMKYLNNTLLYTPRTSSSTTKMLPAGIPPPTIWSKDGIPEDT 167
           +SW +++ S     ++       TSSS T   P   PPPT  S   +   T
Sbjct: 19  SSWRRSSTSGSISQSSRTTSKTTTSSSVTSSNPINAPPPTATSSSSVLPST 69


>AL137227-4|CAB70239.2|  550|Caenorhabditis elegans Hypothetical
           protein F58D5.4a protein.
          Length = 550

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -1

Query: 319 NSWSQATPSAMKYLNNTLLYTPRTSSSTTKMLPAGIPPPTIWSKDGIPEDT 167
           +SW +++ S     ++       TSSS T   P   PPPT  S   +   T
Sbjct: 23  SSWRRSSTSGSISQSSRTTSKTTTSSSVTSSNPINAPPPTATSSSSVLPST 73


>AC087794-1|AAG53701.2|  304|Caenorhabditis elegans Hypothetical
           protein Y32G9A.8 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 265 LYTPRTSSSTTKMLPAGIPPPTI-WSKDGIPEDTYGRLFFT 146
           +Y P  S++  +    G P P I W KD  P +  GR+ FT
Sbjct: 160 VYAPLDSAARIQCPIVGYPEPQIVWYKDKFPLEIEGRVKFT 200


>U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical
           protein F53B3.2 protein.
          Length = 634

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = -1

Query: 337 SKDVTNNSWSQATPSAMKYLNNTLLYTPRTSSSTTKMLPAGIPPPTIWSKDGIPEDTYGR 158
           S  + NN W + TPS       ++ +T  T  S T  LP+   P TI      P   Y  
Sbjct: 299 SSIIRNNVWKKVTPSVTPEYTTSVFWT--TPMSVTAELPS--EPSTITMLIPTPPSEYQT 354

Query: 157 LFFTF--VPFI 131
           ++ +   +PFI
Sbjct: 355 VYSSTAGIPFI 365


>Z93395-5|CAE18034.1|  519|Caenorhabditis elegans Hypothetical
           protein ZC101.3 protein.
          Length = 519

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 352 LCGSSSKDVTNNSWSQATPSAMKYL 278
           L G   KDV+N  WS+ +P A+ YL
Sbjct: 70  LTGPLMKDVSNWEWSRWSPFALSYL 94


>Z83112-6|CAE17883.1|  519|Caenorhabditis elegans Hypothetical
           protein ZC101.3 protein.
          Length = 519

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 352 LCGSSSKDVTNNSWSQATPSAMKYL 278
           L G   KDV+N  WS+ +P A+ YL
Sbjct: 70  LTGPLMKDVSNWEWSRWSPFALSYL 94


>AL132898-4|CAC14407.3|  968|Caenorhabditis elegans Hypothetical
           protein Y59A8B.6 protein.
          Length = 968

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -1

Query: 589 VLSCQVVVPYWILLFSIVSASMYLLKSKLCPKLVLL--PNDDSTWLK 455
           +  C  V+P WILL  +   +  ++K+++  +   L  P +D  WL+
Sbjct: 763 IRKCPGVIPLWILLVRLEEKAGQIVKARVDLEKARLRNPKNDDLWLE 809


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,879,779
Number of Sequences: 27780
Number of extensions: 404149
Number of successful extensions: 1299
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)