Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10n17
(739 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11220.1 68416.m01364 Paxneb protein-related contains Pfam pr... 70 1e-12
At2g45340.1 68415.m05642 leucine-rich repeat transmembrane prote... 30 1.4
At3g59490.1 68416.m06638 expressed protein 29 3.2
At2g41420.1 68415.m05111 proline-rich family protein contains pr... 28 5.6
At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger) fa... 28 5.6
At1g80930.1 68414.m09495 MIF4G domain-containing protein / MA3 d... 28 5.6
At1g78310.1 68414.m09126 VQ motif-containing protein contains PF... 28 5.6
At5g51460.3 68418.m06381 trehalose-6-phosphate phosphatase (TPPA... 28 7.4
At5g51460.2 68418.m06380 trehalose-6-phosphate phosphatase (TPPA... 28 7.4
At5g51460.1 68418.m06379 trehalose-6-phosphate phosphatase (TPPA... 28 7.4
At5g46450.1 68418.m05721 disease resistance protein (TIR-NBS-LRR... 27 9.8
>At3g11220.1 68416.m01364 Paxneb protein-related contains Pfam
profile PF05625: PAXNEB protein; similar to Paxneb
protein (GI:10129788) [Mus musculus]; similar to PAX
neighbour protein (GI:15887001) [Takifugu rubripes]
Length = 355
Score = 70.1 bits (164), Expect = 1e-12
Identities = 43/148 (29%), Positives = 75/148 (50%), Gaps = 4/148 (2%)
Frame = +3
Query: 99 SFRKFIDI--STHINGTKV-KNNLPYVSSGIPSLDHIVGGGIPAGSIFVVEEDVLGVYSK 269
SF + I + S I G K N ++SSGI LD I+GGG P GS+ +V ED +
Sbjct: 11 SFSRNISVVSSPQIPGLKSGPNGTAFISSGIRDLDRILGGGYPLGSLVMVMEDPEAPHHM 70
Query: 270 VLFKYFIAEGVACDHELFVTSLDEDPHKITSELPQPCALPPEDEKALSTD-AEKMKIAWR 446
L + ++++G+ + L S +DP LP P + + A D E ++IAW+
Sbjct: 71 DLLRTYMSQGLVNNQPLLYASPSKDPKGFLGTLPHPASSKEDKPTAPDPDQGESLRIAWQ 130
Query: 447 YEGLSQVESSFGSNTNFGHNFDLSRYID 530
Y +E+ + ++ ++FD+ + ++
Sbjct: 131 YR--KYLENQKNAIDDYSNDFDMRKPLE 156
>At2g45340.1 68415.m05642 leucine-rich repeat transmembrane protein
kinase, putative
Length = 691
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 331 DVTNNSWSQATPSAMKYLNNTLLYT 257
D+ NNS+S PSA+K LNN Y+
Sbjct: 218 DIRNNSFSGFVPSALKRLNNGFQYS 242
>At3g59490.1 68416.m06638 expressed protein
Length = 243
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Frame = +3
Query: 159 LPYVSSGIPSLDHIVGGGIPAGS---IFVVEEDVLGVYSKVLFKYFIAEGVACDHELFVT 329
+P + + + SL ++ G+P + V+E+ + + + L K F++ + + ELF
Sbjct: 55 MPELQNRLLSLLELIREGLPVFKDLKVMVIEDMIYLINVRSLPK-FVSSSLDSEPELFFI 113
Query: 330 SLDEDPHKITSE 365
L++DP K+ ++
Sbjct: 114 DLEQDPPKMVTQ 125
>At2g41420.1 68415.m05111 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 98
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 223 PAGIPPPTIWSKDGIPEDTY 164
P G+PPP + +G P+D Y
Sbjct: 8 PVGVPPPQGYPPEGYPKDAY 27
>At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 683
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 259 TPRTSSSTTKMLPAGIPPPTIWSKDGIPEDTYGR 158
T R + ++ + IP TIW IPED + R
Sbjct: 418 TDRQAHQVAQLAHSRIPIHTIWLSHAIPEDAFAR 451
>At1g80930.1 68414.m09495 MIF4G domain-containing protein / MA3
domain-containing protein similar to SP|Q9P6R9 Cell
cycle control protein cwf22 {Schizosaccharomyces pombe};
contains Pfam profiles PF02854: MIF4G domain, PF02847:
MA3 domain
Length = 900
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 566 YYNLARQYFKLANNYAQREIKKCFVSQ 646
YY L Q F + N Q +KCFV Q
Sbjct: 701 YYGLLGQRFCMINKIHQENFEKCFVQQ 727
>At1g78310.1 68414.m09126 VQ motif-containing protein contains
PF05678: VQ motif
Length = 311
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -1
Query: 313 WSQATPSAMKYLNNTLL--YTPRTSSSTTKMLPAGIPPPTIWSKDGIPEDTYGRL 155
W Q +A +N+ + P SS+ ++ +P IP P ++ P+ YG L
Sbjct: 225 WYQQQENAPPSQHNSFPPPHPPPPSSAVSQTVPTSIPAPPLFGCSSSPKSPYGLL 279
>At5g51460.3 68418.m06381 trehalose-6-phosphate phosphatase (TPPA)
identical to trehalose-6-phosphate phosphatase (AtTPPA)
[Arabidopsis thaliana] GI:2944178
Length = 385
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Frame = -1
Query: 313 WSQATPSAMKYLNNTLLYTPRT---------SSSTTKMLPAGIPPPTIWSKDGIPED 170
+S A +A+ NN LL PR S+ + + PPPTI +KD + D
Sbjct: 32 YSSAAATAISQNNNLLLTVPRKKTGILDDVKSNGWLDAMKSSSPPPTILNKDNLSND 88
>At5g51460.2 68418.m06380 trehalose-6-phosphate phosphatase (TPPA)
identical to trehalose-6-phosphate phosphatase (AtTPPA)
[Arabidopsis thaliana] GI:2944178
Length = 384
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Frame = -1
Query: 313 WSQATPSAMKYLNNTLLYTPRT---------SSSTTKMLPAGIPPPTIWSKDGIPED 170
+S A +A+ NN LL PR S+ + + PPPTI +KD + D
Sbjct: 32 YSSAAATAISQNNNLLLTVPRKKTGILDDVKSNGWLDAMKSSSPPPTILNKDNLSND 88
>At5g51460.1 68418.m06379 trehalose-6-phosphate phosphatase (TPPA)
identical to trehalose-6-phosphate phosphatase (AtTPPA)
[Arabidopsis thaliana] GI:2944178
Length = 385
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Frame = -1
Query: 313 WSQATPSAMKYLNNTLLYTPRT---------SSSTTKMLPAGIPPPTIWSKDGIPED 170
+S A +A+ NN LL PR S+ + + PPPTI +KD + D
Sbjct: 32 YSSAAATAISQNNNLLLTVPRKKTGILDDVKSNGWLDAMKSSSPPPTILNKDNLSND 88
>At5g46450.1 68418.m05721 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1123
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/59 (28%), Positives = 23/59 (38%)
Frame = +3
Query: 408 LSTDAEKMKIAWRYEGLSQVESSFGSNTNFGHNFDLSRYIDADTIEKSKIQYGTTTWQD 584
L +D +M W G+ + + +N F S YID I KS YG D
Sbjct: 202 LESDEVRMVGIWGTSGIGKTTIARALFSNLSSQFQSSVYIDRAFISKSMEGYGRANPDD 260
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,426,619
Number of Sequences: 28952
Number of extensions: 355029
Number of successful extensions: 1079
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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