Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n15
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1169 - 26655170-26655332,26655429-26655504,26655603-266557...    29   3.8  
11_02_0015 - 7355989-7357092                                           29   5.1  
05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351     29   5.1  
03_06_0662 + 35377974-35378270,35378354-35378623,35378795-353789...    28   6.7  
03_02_0068 + 5390004-5390425,5390517-5390949                           28   6.7  
07_01_0889 + 7426680-7427396,7428073-7428222,7429296-7429601           28   8.8  

>12_02_1169 -
           26655170-26655332,26655429-26655504,26655603-26655715,
           26655808-26655913,26656001-26656235,26656415-26656573,
           26657279-26657377,26657472-26657568,26657650-26657768,
           26657860-26658000,26658100-26658184,26658287-26658488,
           26659274-26659379
          Length = 566

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +2

Query: 134 IVAKAKLAFIKDCFEAVVCENGGLFVLTGGAAVTCHIDDDD 256
           +   A   F+        C  GGL +L G   V C+ID DD
Sbjct: 439 LTTSASFTFLPFLLRCFFCVFGGLLLLAG-LGVLCYIDQDD 478


>11_02_0015 - 7355989-7357092
          Length = 367

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = +2

Query: 407 PLVMLKCYQNGAYRLNGQIDLHLNRHIKCIKTQYNDEFDLVRFALQIDITSAYGVDEYTD 586
           PL   +CY  G     G I  H+ R   C        F+ VR A  + I   +G +E TD
Sbjct: 183 PLDAARCYLGGD-SAGGNIAHHVARRYACDAAA----FENVRVAGLVAIQPFFGGEERTD 237

Query: 587 NCVKITTAPL 616
           + +++  AP+
Sbjct: 238 SELRLDGAPI 247


>05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351
          Length = 1007

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 587  NCVKITTAPL-SFNVFFVNVRIMKRPFNADRCIKKFFASWKRISRVGVV 730
            NCV I   P     +    + I + PF A+RC +     W +IS + ++
Sbjct: 941  NCVSIKCLPAHGLPLSLEELYIKECPFLAERCQENSGEDWPKISHIAII 989


>03_06_0662 +
           35377974-35378270,35378354-35378623,35378795-35378973,
           35380073-35380116,35380295-35380384,35380472-35380588,
           35380679-35380803,35380883-35381155,35381253-35381386,
           35381518-35381604,35381714-35381831
          Length = 577

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -2

Query: 664 EGSFHNAHVDKKHVERQRGCGYFNAVVGILVDAVCACY 551
           E   H   +DK+HVE     GY    V +L D +   Y
Sbjct: 263 EAPVHRGGLDKEHVEYLNSLGYPKPPVNVLDDGLILAY 300


>03_02_0068 + 5390004-5390425,5390517-5390949
          Length = 284

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -1

Query: 515 HRCTVFLCILYGGLSANRFDRLVYRLRFDNISALPTDLTCKFDALTRPIQRNVGRRI 345
           HR  ++  +  G ++ + FD   +R R+DN+ A   DL    DAL  P    VG  +
Sbjct: 62  HRVVLYDLVCAGSVNPDHFD---FR-RYDNLDAYVDDLLAILDALRIPRCAFVGHSV 114


>07_01_0889 + 7426680-7427396,7428073-7428222,7429296-7429601
          Length = 390

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 29  SSSPLFIMERLLNQLNLGVLPYITTKDI--EDRLRDKIVAKAKL 154
           SS    ++E +LN +  G+L Y+   D+  ED +  ++ +K KL
Sbjct: 325 SSPTALVVEGILNSVAAGILIYMALVDLLAEDFMNPRVQSKGKL 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,617,006
Number of Sequences: 37544
Number of extensions: 343434
Number of successful extensions: 912
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)