Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n15
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      30   1.7  
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)                       30   2.2  
SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)               29   5.2  
SB_38709| Best HMM Match : Ank (HMM E-Value=3.6e-10)                   28   6.8  
SB_26161| Best HMM Match : Herpes_LP (HMM E-Value=1.7)                 28   6.8  

>SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 587

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 584 DNCVKITTAPLSFNVFFVNVRIMKRPFNADRCIKKF 691
           + C K    P+S N     V  ++RP+  D+C KKF
Sbjct: 506 NECEKKFKHPVSLNKHVRGVHSLERPYKCDQCDKKF 541


>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
          Length = 960

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +2

Query: 149  KLAFIKDCFEAVVCENGGLFVLTGGAAVTCHIDDDDYKSALKCIDFDYYGLCSKKMFCN 325
            K  F   C +  +CENG       GA  TC    +  + +  C++  Y G C+K   CN
Sbjct: 901  KGTFGPGCTQRCLCENGAKCDRKTGAC-TCAPGFEGLRCSRPCLEGRYGGNCTKICDCN 958


>SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)
          Length = 1737

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 552  ISICSANLTKSNSSLYCVFMHFIWRFKCKSI 460
            +S+ S +L  SN +++ + MH +  F CK I
Sbjct: 932  VSLHSLSLYSSNEAIFKILMHVVKLFDCKEI 962


>SB_38709| Best HMM Match : Ank (HMM E-Value=3.6e-10)
          Length = 218

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = -3

Query: 255 SSSSIWHVTAAPPVNTNKPPFSQTTASKQSLINANFALATILSRKRSSISFVVI*GRTPR 76
           S   + H+  A P   NKP  S  T   ++    N     +L  + + ++F    GRTP 
Sbjct: 136 SLQELEHLLDADPRYVNKPSSSGQTPLHKAAGKGNIESVRLLLTRGADVNFADKQGRTPM 195

Query: 75  FS*FNK 58
              +NK
Sbjct: 196 LLAWNK 201


>SB_26161| Best HMM Match : Herpes_LP (HMM E-Value=1.7)
          Length = 412

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +3

Query: 285 LIITAFAQKKCFATCKLIYKNASTNITLNWTC*RVKFTC 401
           L + AFA KKC  T  +  KNA  +    W C R    C
Sbjct: 364 LSLPAFA-KKCMDTAAVCRKNAGKDWNKRWACRRAFVKC 401


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,239,425
Number of Sequences: 59808
Number of extensions: 427877
Number of successful extensions: 1121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)