Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n15
         (734 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67310.1 68418.m08488 cytochrome P450 family protein                30   1.8  
At1g03560.1 68414.m00337 pentatricopeptide (PPR) repeat-containi...    28   7.4  
At5g57660.1 68418.m07205 zinc finger (B-box type) family protein...    27   9.8  

>At5g67310.1 68418.m08488 cytochrome P450 family protein
          Length = 507

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 254 DYKSALKCIDFDYYGLCSKKMFCNLQTNLQKCVDQH 361
           D+   LK  D D Y   +KK+   L   +QK VD+H
Sbjct: 233 DFLPTLKLFDLDGYRKRAKKLASKLDKFMQKLVDEH 268


>At1g03560.1 68414.m00337 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 660

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 592 AVVGILVDAVCACYINL*CKSNQIK 518
           A +G+++DA C   IN  CK+ +IK
Sbjct: 565 APMGVILDAACEDMINTLCKAGRIK 589


>At5g57660.1 68418.m07205 zinc finger (B-box type) family protein
           contains Pfam domain, PF00643: B-box zinc finger
          Length = 355

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 717 RDIRFQEAKNFLMQRSALKGRFIMRTLTKN 628
           + IR+   K +   R  +KGRF  RT T+N
Sbjct: 303 KTIRYASRKAYAESRPRIKGRFAKRTETEN 332


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,536,980
Number of Sequences: 28952
Number of extensions: 284913
Number of successful extensions: 764
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)