Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n13
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)             279   2e-75
SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05)              29   3.3  
SB_45852| Best HMM Match : I-set (HMM E-Value=0)                       28   5.8  
SB_34554| Best HMM Match : RVT_1 (HMM E-Value=0.2)                     28   5.8  
SB_32309| Best HMM Match : C1_3 (HMM E-Value=7.3)                      28   5.8  
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)                     28   5.8  
SB_58015| Best HMM Match : rve (HMM E-Value=0.00087)                   28   7.7  
SB_28159| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score =  279 bits (683), Expect = 2e-75
 Identities = 129/164 (78%), Positives = 149/164 (90%)
 Frame = +2

Query: 146 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 325
           MPPKFDPNEI+ V LRC GGEVGAT+SLAPKIGPLGLSPKKVGDDIAKAT DWKGLKITV
Sbjct: 1   MPPKFDPNEIQYVYLRCTGGEVGATASLAPKIGPLGLSPKKVGDDIAKATQDWKGLKITV 60

Query: 326 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRS 505
            LT+QNRQA+++VVPSA++LII+ALKEPPRDRKK KNIKHNGNI+L+DV  +AK+MR RS
Sbjct: 61  CLTIQNRQAKVSVVPSASSLIIKALKEPPRDRKKVKNIKHNGNITLDDVTNVAKVMRPRS 120

Query: 506 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTIDE 637
           MAR+LSG+VKEILGT QSVGCTV+G  PHD+ID INSG + I++
Sbjct: 121 MARHLSGTVKEILGTCQSVGCTVDGMAPHDVIDKINSGEIEIED 164


>SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05)
          Length = 302

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 314 KITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKH 445
           ++ ++     RQ +   +PSA    IR  +E PR  +K  N+KH
Sbjct: 97  RVIIRAVGSRRQVEPLPLPSALKEWIREYEEEPRFDRKLTNLKH 140


>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1122

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 473 IGIAKIMRNRSMARYLSGS-VKEILGTAQSVGCTVEGRPP 589
           +G  K++++R       G  V+ + GT  S+ C VEG PP
Sbjct: 128 VGTHKLLKSRDPVIVTIGDKVETLTGTEVSIICPVEGLPP 167


>SB_34554| Best HMM Match : RVT_1 (HMM E-Value=0.2)
          Length = 671

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +2

Query: 218 TSSLAP-KIGPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 388
           T  L P ++ PLGL PKK+  D  ++   S  KGL +   +++++   + A +  A + I
Sbjct: 369 TPPLVPFRVSPLGLVPKKLPGDFRLSHHLSYPKGLSVNDGISLEHSTVRYATIGDAISKI 428


>SB_32309| Best HMM Match : C1_3 (HMM E-Value=7.3)
          Length = 193

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 548 TAQSVGCTVEGRPPHDLIDDINSG 619
           T   + C VE  PPH++ D +N G
Sbjct: 150 TLNQLYCPVEPNPPHNMFDHVNLG 173


>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1569

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = -2

Query: 421 TVTRRLLKGSDDKGCC-----RGNNSYLGLSVLNCQLHSDLETLPVTCGLGNVITH 269
           +++  +  GSD+K CC      G  + LG+  +   +HSD++  P+   L  +  H
Sbjct: 108 SLSSSMFTGSDNKLCCFFLGQDGEKAMLGIVYVLTHVHSDIQFCPLLPVLAALFLH 163


>SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)
          Length = 2568

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = +2

Query: 206  EVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQLTVQNRQAQIAVVPS 373
            E+G T +    +  LG  PK V +D     +DW    +       +    IA+ PS
Sbjct: 1793 ELGITDAEGNYVDSLGADPKAVSNDYVGYATDWVNNNLPENAITNSTWTGIALGPS 1848


>SB_58015| Best HMM Match : rve (HMM E-Value=0.00087)
          Length = 1333

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +1

Query: 466  RCNRHCEDHEKQINGP----VPFWLSKRDSWHSTVSWMYCGGQA 585
            RC RH + H  +IN      + +W    +SW+   SW+Y G +A
Sbjct: 982  RCFRH-DRHPIRINNETRRDLVWWQQFLESWNGVSSWLYPGLEA 1024


>SB_28159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 491

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 242 GPLGLSPKKVGDDIAKATSDWKG 310
           GPLG+  +++ D    ++SDW G
Sbjct: 337 GPLGMEDRRIQDSQINSSSDWDG 359


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,227,926
Number of Sequences: 59808
Number of extensions: 446059
Number of successful extensions: 1134
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)