Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10n13
(656 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S ... 241 4e-64
At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S ... 233 6e-62
At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A) 232 1e-61
At3g47110.1 68416.m05115 leucine-rich repeat transmembrane prote... 34 0.096
At4g31260.1 68417.m04437 hypothetical protein 30 1.6
At2g31890.1 68415.m03896 expressed protein 28 4.8
At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein, p... 28 4.8
At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding ... 27 8.3
At3g14840.2 68416.m01875 leucine-rich repeat family protein / pr... 27 8.3
>At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S
RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana,
PIR:T45883
Length = 166
Score = 241 bits (589), Expect = 4e-64
Identities = 116/163 (71%), Positives = 140/163 (85%), Gaps = 1/163 (0%)
Frame = +2
Query: 146 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 322
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 323 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNR 502
V+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DVI IAKIMR R
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120
Query: 503 SMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTI 631
S+A+ LSG+VKEILGT SVGCTV+G+ P DL ++INSG + I
Sbjct: 121 SIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDI 163
>At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S
RIBOSOMAL PROTEIN L12, Prunus armeniaca,
SWISSPROT:RL12_PRUAR
Length = 166
Score = 233 bits (571), Expect = 6e-62
Identities = 112/165 (67%), Positives = 137/165 (83%), Gaps = 1/165 (0%)
Frame = +2
Query: 146 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 322
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 323 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNR 502
V+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV IA+IMR R
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120
Query: 503 SMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTIDE 637
S+A+ LSG+V+EILGT SVGCTV+G+ P DL +I G + I E
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPE 165
>At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)
Length = 166
Score = 232 bits (568), Expect = 1e-61
Identities = 111/165 (67%), Positives = 137/165 (83%), Gaps = 1/165 (0%)
Frame = +2
Query: 146 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 322
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 323 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNR 502
V+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV IA+IMR R
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120
Query: 503 SMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTIDE 637
S+A+ LSG+V+EILGT SVGCTV+G+ P D+ +I G + I E
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPE 165
>At3g47110.1 68416.m05115 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21 receptor type
precursor, Oryza sativa, PIR:A57676
Length = 1025
Score = 33.9 bits (74), Expect = 0.096
Identities = 19/73 (26%), Positives = 38/73 (52%)
Frame = -3
Query: 612 LMSSIRSCGGLPSTVHPTDCAVPRISFTEPERYRAIDLFLMIFAMPITSSREMLPLCLIF 433
+ +I CGG+PS + C+V P R+ ++ + I + ++ +L LC+++
Sbjct: 622 VFGNINLCGGIPS-LQLQPCSVEL-----PRRHSSVRKIITICVSAVMAALLLLCLCVVY 675
Query: 432 FCFLRSRGGSLRA 394
C+ + R S+RA
Sbjct: 676 LCWYKLRVKSVRA 688
>At4g31260.1 68417.m04437 hypothetical protein
Length = 63
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -3
Query: 651 IRNIYSSMVKAPLLMSSIRSCGGLPSTV 568
IR++Y VK+ + + IRSCGG+ ++V
Sbjct: 28 IRSLYPDKVKSEIPIQDIRSCGGVLASV 55
>At2g31890.1 68415.m03896 expressed protein
Length = 671
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +2
Query: 404 EPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMA 511
+PP+ RKKQKN K +LED G+ +R R +A
Sbjct: 112 QPPKKRKKQKNSK-----ALEDTEGMDWCVRARKIA 142
>At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein,
putative / ADP, ATP translocase, putative / adenine
nucleotide translocase, putative strong similarity to
SP|Q39002 Chloroplast ADP,ATP carrier protein 1,
chloroplast precursor (ADP/ATP translocase 1) (Adenine
nucleotide translocase 1) {Arabidopsis thaliana};
contains Pfam profile PF03219: TLC ATP/ADP transporter
Length = 618
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = -3
Query: 489 IFAMPITSSREMLPLCLIFFCFL 421
IF + +T+ ++++PL L+FFC L
Sbjct: 102 IFGVEVTTLKKIVPLGLMFFCIL 124
>At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding
subunit (ClpD), (ERD1) SAG15/ERD1; identical to ERD1
protein GI:497629, SP:P42762 from [Arabidopsis
thaliana]; contains Pfam profile PF02861: Clp amino
terminal domain
Length = 945
Score = 27.5 bits (58), Expect = 8.3
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 203 GEVGATSSLAPKIGPLGLSPKKVG-DDIAKATSDWKGLKITVQLTVQNR 346
GE+ SSL P G P VG DDIA S W G+ + Q+T R
Sbjct: 570 GELVEESSLPPAAGDD--EPILVGPDDIAAVASVWSGIPVQ-QITADER 615
>At3g14840.2 68416.m01875 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain; contains 2 predicted transmembrane domains
Length = 988
Score = 27.5 bits (58), Expect = 8.3
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Frame = +2
Query: 119 IKLN*VINKMPPKFD--PNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKA 292
++ N + K+PP+ PN ++ N + GE+ +T + + L +S + I
Sbjct: 165 LEYNQLSGKIPPELGNLPNLKRLSNN--LSGEIPSTFAKLTTLTDLRISDNQFTGAIPDF 222
Query: 293 TSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 388
+WKGL+ +L +Q + +PSA L+
Sbjct: 223 IQNWKGLE---KLVIQ-ASGLVGPIPSAIGLL 250
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,917,323
Number of Sequences: 28952
Number of extensions: 313170
Number of successful extensions: 821
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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