Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n08
         (736 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    23   2.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   4.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   4.5  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    22   5.9  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   5.9  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   7.8  

>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 513 LVGVIPLNTINMDLNSLISKFAVPRVMVTLL 421
           +VGV PLN +N +   L   F   +V+ T L
Sbjct: 37  IVGVFPLNHLNEEPEKLHFTFKSWKVLYTSL 67


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 521  EDNGMLRFEVDSMIVCLIDPNTGPLSEREVRELRK 625
            +D G L F V+ +  C+I   T     +E  +LRK
Sbjct: 1072 DDEGGLEFSVNKLFKCMI--CTYKADNKENEQLRK 1104


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 521  EDNGMLRFEVDSMIVCLIDPNTGPLSEREVRELRK 625
            +D G L F V+ +  C+I   T     +E  +LRK
Sbjct: 1072 DDEGGLEFSVNKLFKCMI--CTYKADNKENEQLRK 1104


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 723 EIGGWSALIAVKLFSN 676
           E+GG   LIA  LFSN
Sbjct: 122 ELGGLGTLIAPFLFSN 137


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 591 RCPNERCANCANPTAL 638
           + P E CA C N T+L
Sbjct: 723 KVPGECCAICVNATSL 738


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 335 GSNKVGTNSIFLGTVYD 385
           G+N++GT  IFL   +D
Sbjct: 492 GNNRMGTCRIFLAPQFD 508


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,091
Number of Sequences: 336
Number of extensions: 3772
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)