Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n07
         (341 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29748| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.56 
SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)                 28   2.3  
SB_15139| Best HMM Match : Collagen (HMM E-Value=0.27)                 27   4.0  
SB_34889| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   5.3  

>SB_29748| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 33

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 9/30 (30%), Positives = 21/30 (70%)
 Frame = -2

Query: 268 KCVLLKFKQVPEKQSELLIDPSYLFMFHVI 179
           +C  +KF ++P++ ++LL+ P  + + H+I
Sbjct: 3   ECPRMKFSEIPQRLNQLLVPPDPIVIHHLI 32


>SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
          Length = 1127

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 53  PSAVDYADFSKLYKLIYFDLNF 118
           PS   YADF  ++K  +FD N+
Sbjct: 84  PSGFSYADFGPMFKAEFFDPNY 105


>SB_15139| Best HMM Match : Collagen (HMM E-Value=0.27)
          Length = 562

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -2

Query: 256 LKFKQVPEKQSELLIDPSYLFMFHVIK*LIKCCSVVRRVAMFLLSCE 116
           L    VP+     L+ P+YL M +V + +++  + +R +A    SC+
Sbjct: 18  LSMSYVPQHVLRTLVRPTYLSMSYVPQHVLRTSACLRILARLRASCQ 64


>SB_34889| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 615

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 155 RCATCGYVSVIL*NLNRNISAYKVLKNQRSPQ 60
           +C+ CG+  V   +L R+++A+   KN + P+
Sbjct: 468 KCSICGHAFVKSADLKRHVAAHNNEKNYKCPE 499


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,278,447
Number of Sequences: 59808
Number of extensions: 155857
Number of successful extensions: 193
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)