Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n07
         (341 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66619-1|AAC50697.1|  469|Homo sapiens SWI/SNF complex 60 KDa su...    29   2.9  
BC110350-1|AAI10351.1|  470|Homo sapiens SWI/SNF related, matrix...    29   2.9  
BC002628-1|AAH02628.1|  470|Homo sapiens SWI/SNF related, matrix...    29   2.9  
AY450431-1|AAR88511.1|  470|Homo sapiens 60kDa BRG-1/Brm associa...    29   2.9  
AY450430-1|AAR88510.1|  483|Homo sapiens 60kDa BRG-1/Brm associa...    29   2.9  
AC021097-1|AAS00380.1|  170|Homo sapiens unknown protein.              29   3.8  

>U66619-1|AAC50697.1|  469|Homo sapiens SWI/SNF complex 60 KDa
           subunit protein.
          Length = 469

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 283 QIFI*KCVLLKFKQVPEKQSELLIDPSYLFMFHVI 179
           QIF   C  LKF ++P++ + LL+ P  + + HVI
Sbjct: 299 QIF--DCPRLKFSEIPQRLTALLLPPDPIVINHVI 331


>BC110350-1|AAI10351.1|  470|Homo sapiens SWI/SNF related, matrix
           associated, actin dependent regulator of chromatin, sub
           protein.
          Length = 470

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 283 QIFI*KCVLLKFKQVPEKQSELLIDPSYLFMFHVI 179
           QIF   C  LKF ++P++ + LL+ P  + + HVI
Sbjct: 300 QIF--DCPRLKFSEIPQRLTALLLPPDPIVINHVI 332


>BC002628-1|AAH02628.1|  470|Homo sapiens SWI/SNF related, matrix
           associated, actin dependent regulator of chromatin, sub
           protein.
          Length = 470

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 283 QIFI*KCVLLKFKQVPEKQSELLIDPSYLFMFHVI 179
           QIF   C  LKF ++P++ + LL+ P  + + HVI
Sbjct: 300 QIF--DCPRLKFSEIPQRLTALLLPPDPIVINHVI 332


>AY450431-1|AAR88511.1|  470|Homo sapiens 60kDa BRG-1/Brm associated
           factor subunit c isoform 1 protein.
          Length = 470

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 283 QIFI*KCVLLKFKQVPEKQSELLIDPSYLFMFHVI 179
           QIF   C  LKF ++P++ + LL+ P  + + HVI
Sbjct: 300 QIF--DCPRLKFSEIPQRLTALLLPPDPIVINHVI 332


>AY450430-1|AAR88510.1|  483|Homo sapiens 60kDa BRG-1/Brm associated
           factor subunit c isoform 2 protein.
          Length = 483

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 283 QIFI*KCVLLKFKQVPEKQSELLIDPSYLFMFHVI 179
           QIF   C  LKF ++P++ + LL+ P  + + HVI
Sbjct: 313 QIF--DCPRLKFSEIPQRLTALLLPPDPIVINHVI 345


>AC021097-1|AAS00380.1|  170|Homo sapiens unknown protein.
          Length = 170

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 265 CVLLKFKQVPEKQSELLIDPSYLFMFHVI 179
           C  LKF ++P++ + LL+ P  + + HVI
Sbjct: 4   CPRLKFSEIPQRLTALLLPPDPIVINHVI 32


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,415,811
Number of Sequences: 237096
Number of extensions: 727915
Number of successful extensions: 1248
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1910415606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)