Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n07
         (341 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M19020-1|AAA28900.1|  655|Drosophila melanogaster protein ( D.me...    27   8.4  
AY129457-1|AAM76199.1|  688|Drosophila melanogaster RE54280p pro...    27   8.4  
AF071934-1|AAC64519.1|  643|Drosophila melanogaster single-minde...    27   8.4  
AE014297-1631|AAN14343.3|  664|Drosophila melanogaster CG7771-PB...    27   8.4  
AE014297-1630|AAF54902.3|  688|Drosophila melanogaster CG7771-PA...    27   8.4  

>M19020-1|AAA28900.1|  655|Drosophila melanogaster protein (
           D.melanogaster single-minded (sim) mRNA, encoding a
           nuclear protein, 3'end.).
          Length = 655

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 44  ELEPSAVDYADFSKLYKLIYFDLNFTR*QKHSH 142
           E  PS   Y+D S  ++L YF  N +  Q+H H
Sbjct: 605 ETSPSQTTYSDLSHNFELSYFSDNSS--QQHQH 635


>AY129457-1|AAM76199.1|  688|Drosophila melanogaster RE54280p
           protein.
          Length = 688

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 44  ELEPSAVDYADFSKLYKLIYFDLNFTR*QKHSH 142
           E  PS   Y+D S  ++L YF  N +  Q+H H
Sbjct: 638 ETSPSQTTYSDLSHNFELSYFSDNSS--QQHQH 668


>AF071934-1|AAC64519.1|  643|Drosophila melanogaster single-minded
           protein protein.
          Length = 643

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 44  ELEPSAVDYADFSKLYKLIYFDLNFTR*QKHSH 142
           E  PS   Y+D S  ++L YF  N +  Q+H H
Sbjct: 593 ETSPSQTTYSDLSHNFELSYFSDNSS--QQHQH 623


>AE014297-1631|AAN14343.3|  664|Drosophila melanogaster CG7771-PB,
           isoform B protein.
          Length = 664

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 44  ELEPSAVDYADFSKLYKLIYFDLNFTR*QKHSH 142
           E  PS   Y+D S  ++L YF  N +  Q+H H
Sbjct: 614 ETSPSQTTYSDLSHNFELSYFSDNSS--QQHQH 644


>AE014297-1630|AAF54902.3|  688|Drosophila melanogaster CG7771-PA,
           isoform A protein.
          Length = 688

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 44  ELEPSAVDYADFSKLYKLIYFDLNFTR*QKHSH 142
           E  PS   Y+D S  ++L YF  N +  Q+H H
Sbjct: 638 ETSPSQTTYSDLSHNFELSYFSDNSS--QQHQH 668


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,560,844
Number of Sequences: 53049
Number of extensions: 233820
Number of successful extensions: 463
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 798368334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)