Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n07
         (341 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81504-1|CAB04116.1|  426|Caenorhabditis elegans Hypothetical pr...    28   2.0  
AF047658-3|ABC71828.1|  315|Caenorhabditis elegans Hypothetical ...    27   4.7  

>Z81504-1|CAB04116.1|  426|Caenorhabditis elegans Hypothetical
           protein F15H9.1 protein.
          Length = 426

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 9/18 (50%), Positives = 17/18 (94%)
 Frame = -2

Query: 241 VPEKQSELLIDPSYLFMF 188
           VPEK++++L +PS+++MF
Sbjct: 179 VPEKKTQILEEPSFVYMF 196


>AF047658-3|ABC71828.1|  315|Caenorhabditis elegans Hypothetical
           protein K03H6.4 protein.
          Length = 315

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 159 VPLCDVWLCFCYLVKF 112
           V LC V+LCFC +V F
Sbjct: 129 VYLCSVFLCFCAIVAF 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,301,029
Number of Sequences: 27780
Number of extensions: 133357
Number of successful extensions: 232
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)