Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n07
         (341 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   5.4  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   5.4  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   5.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    20   9.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   9.5  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -1

Query: 215 N*SLVPFHVSCH*IIDKMLFRCATCGYVSVIL*NLNRNISAY 90
           N S++  H+  H  + +  +RCA C Y +    +L  ++  Y
Sbjct: 28  NKSMLNSHLKSHSNVYQ--YRCANCTYATKYCHSLKLHLRKY 67


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 92  KLIYFDLNFTR*QKHSHTSHN 154
           KL+ FDLN ++  K     HN
Sbjct: 157 KLLAFDLNTSKLLKQIEIPHN 177


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 167 KMLFRCATCGYVSVIL*NLNRNIS 96
           K LF C  CG V     +L R+++
Sbjct: 3   KKLFTCQLCGKVLCSKASLKRHVA 26


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 320 INFILNLMYKFNSN 279
           IN +LN++Y  N N
Sbjct: 75  INDVLNVLYFINKN 88


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 26  IPSPSAELEPSAVDYAD 76
           + SPSA L+P  V Y +
Sbjct: 96  VGSPSAALQPQHVVYGN 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,925
Number of Sequences: 438
Number of extensions: 1587
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)