Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n07
         (341 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18740.1 68418.m02224 expressed protein predicted proteins - ...    27   3.3  
At5g36740.1 68418.m04402 PHD finger family protein                     26   5.7  
At5g36670.1 68418.m04388 PHD finger family protein                     26   5.7  

>At5g18740.1 68418.m02224 expressed protein predicted proteins -
           Arabidopsis thaliana; expression supported by MPSS
          Length = 609

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 213 ISNSLCFSGTCLNFKSTHFQM 275
           +SN+LCFS TC    + HF +
Sbjct: 270 LSNTLCFSVTCRFINTCHFSV 290


>At5g36740.1 68418.m04402 PHD finger family protein
          Length = 1179

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 320 INFILNLMYKFNSNFH 273
           +N + N++Y F SNFH
Sbjct: 829 VNLLQNIVYNFGSNFH 844


>At5g36670.1 68418.m04388 PHD finger family protein
          Length = 1193

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 320 INFILNLMYKFNSNFH 273
           +N + N++Y F SNFH
Sbjct: 829 VNLLQNIVYNFGSNFH 844


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,673,564
Number of Sequences: 28952
Number of extensions: 115640
Number of successful extensions: 171
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)