Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n06
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11654| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_54209| Best HMM Match : Baculo_11_kDa (HMM E-Value=8)               28   6.8  
SB_39175| Best HMM Match : DUF1378 (HMM E-Value=8)                     28   6.8  
SB_39546| Best HMM Match : FCH (HMM E-Value=8e-13)                     28   6.8  
SB_26266| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 28   6.8  

>SB_11654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1161

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 20/82 (24%), Positives = 41/82 (50%)
 Frame = -3

Query: 431  SVTITWIVLS*TLPKKSNTLTVSILFNLILVSLACIGSNRLRAPTD*VDKIFKLSVLLGV 252
            S+ + W+VL+ +L       TV+ +F ++++    +    L    D      K+ +L  V
Sbjct: 904  SLGLIWVVLNFSLKGNEKAYTVATIFGVVIIIFRFL---TLSGKHD----TLKMLMLTVV 956

Query: 251  MSLINNDAAV*EAVVLMVCNMS 186
            MSL+ +   +   V+LM+ ++S
Sbjct: 957  MSLVKSFFTIAVLVILMIVDIS 978


>SB_54209| Best HMM Match : Baculo_11_kDa (HMM E-Value=8)
          Length = 337

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 21/78 (26%), Positives = 39/78 (50%)
 Frame = -2

Query: 483 ISKYNAIALIVTDDAHLLCNYHLDRVVVNAPQKV*HVDRFDSIQLNFGLVGLHRFQQIAR 304
           ++ + + AL  T  A   C  H   ++  A ++   + R +++ +N  L  + + QQIAR
Sbjct: 107 LTNWTSAALRFTKHAQGNCEIHKFSMI--AIEEFKKIMRTEAVPINLQLNNIVQ-QQIAR 163

Query: 303 SDRLSRQNF*TFSFIGRN 250
           +  + R  F T  F G+N
Sbjct: 164 NREILRSLFKTIIFCGKN 181


>SB_39175| Best HMM Match : DUF1378 (HMM E-Value=8)
          Length = 282

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +3

Query: 645 ITTLP*RLSTRRE--TRASSSQRQRPP 719
           ITT+P RL+ RRE  TRASS     PP
Sbjct: 145 ITTIPSRLTYRREDNTRASSQCSAHPP 171


>SB_39546| Best HMM Match : FCH (HMM E-Value=8e-13)
          Length = 360

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +1

Query: 205 NTTASQTAASLLINDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNRIET 369
           NT+ +  A  L++ND+T  K +    L TQ +   +     +  + KI+ + +ET
Sbjct: 296 NTSTNLKANKLMVNDLTGEKLQHKNTLLTQELQIIDQQLEHKIRDLKIEKDNLET 350


>SB_26266| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1038

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +1

Query: 205 NTTASQTAASLLINDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNRIET 369
           NT+ +  A  L++ND+T  K +    L TQ +   +     +  + KI+ + +ET
Sbjct: 244 NTSTNLKANKLMVNDLTGEKLQHKNTLLTQELQIIDQQLEHKIRDLKIEKDNLET 298


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,171,992
Number of Sequences: 59808
Number of extensions: 424590
Number of successful extensions: 1095
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)