Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n06
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AY099352-1|AAM34494.1|  891|Caenorhabditis elegans gamma-tubulin...    28   7.9  
AF040644-1|AAB94969.2|  891|Caenorhabditis elegans Gamma-tubulin...    28   7.9  

>Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical
           protein F01G4.3 protein.
          Length = 1266

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -2

Query: 492 NLFISKYNAIA-LIVTDDAHLLCNYHLDRVVVNAPQKV*HVDRFDSIQLNFGLVGL 328
           +LF++ + +    +V + A  LC  H  R V  +P K     +F   +  FG VGL
Sbjct: 309 SLFVAAHTSAGKTVVAEYAIALCQAHKTRAVYTSPIKALSNQKFRDFKQIFGDVGL 364


>AY099352-1|AAM34494.1|  891|Caenorhabditis elegans gamma-tubulin
           ring protein GRIP-1 protein.
          Length = 891

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 244 NDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNRI 363
           ND    K    +I   +++GARNL++    N T+ KLN +
Sbjct: 840 NDENARKARIAEICQKKTIGARNLMD--SVNTTQRKLNEL 877


>AF040644-1|AAB94969.2|  891|Caenorhabditis elegans Gamma-tubulin
           interacting proteinprotein 1, isoform a protein.
          Length = 891

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 244 NDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNRI 363
           ND    K    +I   +++GARNL++    N T+ KLN +
Sbjct: 840 NDENARKARIAEICQKKTIGARNLMD--SVNTTQRKLNEL 877


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,638,949
Number of Sequences: 27780
Number of extensions: 317704
Number of successful extensions: 973
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)