Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10n04
(732 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8392| Best HMM Match : Helicase_C (HMM E-Value=0.057) 30 1.7
SB_53633| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_43421| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_41870| Best HMM Match : DUF963 (HMM E-Value=0.22) 29 2.9
SB_177| Best HMM Match : SBP_bac_3 (HMM E-Value=0.032) 29 3.9
SB_59217| Best HMM Match : TRAUB (HMM E-Value=0.25) 28 6.8
SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37) 28 6.8
SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_1398| Best HMM Match : fn3 (HMM E-Value=0.0034) 28 6.8
SB_48110| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11) 28 6.8
SB_22650| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_16373| Best HMM Match : L51_S25_CI-B8 (HMM E-Value=3.6) 28 6.8
SB_5050| Best HMM Match : SSF (HMM E-Value=0.001) 28 6.8
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_53810| Best HMM Match : DUF1542 (HMM E-Value=3.9) 28 9.0
SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_10519| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11) 28 9.0
>SB_8392| Best HMM Match : Helicase_C (HMM E-Value=0.057)
Length = 276
Score = 30.3 bits (65), Expect = 1.7
Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 4/139 (2%)
Frame = +3
Query: 99 SNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKP---F 269
+N K +P + K + S+ EEC DDD + + T E D K
Sbjct: 139 NNSAKTTAVPSDPKQKTLFSCFESLIEECDDDDLIASESDFVTLETSADVKATAKSAMVL 198
Query: 270 ETLNIESDIIKTEQTDAPAT-SGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYKCLKIL 446
+ N ES + Q D A D+ + D D ++ + K V + ++
Sbjct: 199 SSTNTESRSEEPSQLDQAAQFDWFDDMTGLLSDEETDFVKIESSENKGTRVNAGERIRKA 258
Query: 447 VDFLVMYVSKETNMKEYEQ 503
D ++ +KE + K Y++
Sbjct: 259 EDMDII-TAKEPSAKRYKR 276
>SB_53633| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 607
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 642 IRSVKFLKFCLYCCQIRACC 583
+R V+F++ CC+IRACC
Sbjct: 402 VRVVRFMRVTHACCKIRACC 421
>SB_43421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 715
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Frame = +3
Query: 93 LNSNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFE 272
+++N + D I D+ND + + N V ++ DD++ D DD + + +
Sbjct: 610 IDANDVDDDDI-DDNDVDDDDIDDNDVDDDDIDDNDVDDDDIDANDVDDDDIDDNVVDDD 668
Query: 273 TLN---IESDIIKTEQTDAPATSGDDNNNRKVVDANEDEY 383
++ ++ D+I D +D +N + D N D+Y
Sbjct: 669 NIDDNVVDDDVIDAINVDDDGIDANDVDNDDIDDNNIDDY 708
>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1530
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +3
Query: 96 NSNKIKADLIPDENDPKNVTLRLNSVP-EECTDDDNFSIDL-PLTTPEQKDDFMNAIKPF 269
+SN L+P + + + L+ VP + D+F + L P + DDF+ ++ P
Sbjct: 498 SSNDFFVSLVPARSVSSSDEVFLSLVPARSVSSSDDFIVSLVPARSVSSSDDFIVSLVPA 557
Query: 270 ETLNIESDIIKTEQTDAPATSGDD 341
+++ D I + +S DD
Sbjct: 558 HSVSSSDDFIVSLVPAHSVSSSDD 581
>SB_41870| Best HMM Match : DUF963 (HMM E-Value=0.22)
Length = 233
Score = 29.5 bits (63), Expect = 2.9
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 4/150 (2%)
Frame = -3
Query: 610 VLLSNSCVLRSSHSLNGSSTKMLRKTSYNCLPNVYTCSYSFMLVSLLTYITKKSTSIFKH 431
+L ++ VL +S S+ +S +L + +V S S + S T +S
Sbjct: 74 ILATSRSVLATSRSVLATSRSVLATSR-----SVLATSRSVLATSRYILATSRSVLATGR 128
Query: 430 L*YATY-FDLSFKPSTVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFKVSKGLMA 254
+AT + L+ S + +S T R +L++ A+ SVL S I S+ ++A
Sbjct: 129 SSFATSRYILATSRSVLATSRSVLATSRSVLATSRSVLATSRSVLATSRYILATSRSVLA 188
Query: 253 FIKSSFCSG---VVNGKSIEKLSSSVHSSG 173
+SSF + + +S+ S SV ++G
Sbjct: 189 TGRSSFATSRYILATSRSVLATSRSVLATG 218
>SB_177| Best HMM Match : SBP_bac_3 (HMM E-Value=0.032)
Length = 619
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Frame = -3
Query: 625 SKILSVLLSNSCVLRSSHSLNGSSTKMLRKTS------YNCLPNVY-TCSYSFMLVSLLT 467
+K+L L NSC RS H + TK++R + Y+ +++ TC +F+ V+
Sbjct: 456 NKVLRSLALNSCSNRSQHFIGDIITKLVRFSMITSILVYDYSVDLWLTCVATFLFVAFTV 515
Query: 466 YITKKSTSIFK 434
++ +K T K
Sbjct: 516 WLIEKLTKYKK 526
>SB_59217| Best HMM Match : TRAUB (HMM E-Value=0.25)
Length = 626
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/68 (25%), Positives = 29/68 (42%)
Frame = +3
Query: 129 DENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTE 308
D DPK++ ++L P TDD + + PE D P E+ + + +
Sbjct: 326 DMTDPKSIGIKLQRNPSPITDDSSKTATYS-RLPEASSDNSRPESPAESSKSPTSPLSLQ 384
Query: 309 QTDAPATS 332
++A TS
Sbjct: 385 GSEAALTS 392
>SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37)
Length = 1063
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/65 (24%), Positives = 29/65 (44%)
Frame = +3
Query: 138 DPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTD 317
DP +V L N ++ +DDD+ D +P +K + T + S ++ T + +
Sbjct: 941 DPASVPLASNESDDDISDDDDTPDDKSSGSPCKKQPVSPSTPNTTTSDTSSSVLNTSRGE 1000
Query: 318 APATS 332
A S
Sbjct: 1001 VAANS 1005
>SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1758
Score = 28.3 bits (60), Expect = 6.8
Identities = 27/108 (25%), Positives = 45/108 (41%)
Frame = +3
Query: 318 APATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYKCLKILVDFLVMYVSKETNMKEY 497
+PAT + K + DE+ VD KLK + + V ++ K +M Y
Sbjct: 321 SPATKRRTTDRIKALLKEVDEFKVDNTKLKPREAKALAQARFTVKYM---FGKPYDMNYY 377
Query: 498 EQVYTLGRQLYEVLRSIFVDEPFKLWLERNTHEFDNNTDKILETLQSE 641
Y LG L+ +++ I + N F N+ LETL+++
Sbjct: 378 AGDYMLGPNLWCMMQPICTVGGD---ISANLRYFRPNSTADLETLRNK 422
>SB_1398| Best HMM Match : fn3 (HMM E-Value=0.0034)
Length = 2245
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -3
Query: 292 SDSIFKVSKGLMAFIKSSFCSGVVNGKSIEKLSSSV 185
S ++++VS G++ +GV +GK++E +SSV
Sbjct: 89 SRTVYRVSSGVLGGSSGPIWAGVSSGKTVEGTASSV 124
>SB_48110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 399 LSRPPCTRPRSHRPLFDYYYHRR 331
L + PCTR R+ + + D YHRR
Sbjct: 38 LCQSPCTRGRNRKRVSDTIYHRR 60
>SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)
Length = 1214
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 672 ICLYRPAQVSIRSVKFLKFCLYCCQIRACCV 580
+ LYR + S + L C+ C + +CCV
Sbjct: 321 VVLYRVVSCRVVSCRVLSCCIVSCLVLSCCV 351
>SB_22650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 531
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +3
Query: 189 DDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDD--NNNRKVV 362
D+D++S+D+ P Q + A P+ +I S + + +D T DD ++V
Sbjct: 96 DEDDYSLDILRKVPLQDNLVTKAFGPYPESHISSAVDSEDDSD---TDDDDLEIGRSQIV 152
Query: 363 DANE 374
DA+E
Sbjct: 153 DADE 156
>SB_16373| Best HMM Match : L51_S25_CI-B8 (HMM E-Value=3.6)
Length = 537
Score = 28.3 bits (60), Expect = 6.8
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -1
Query: 375 PRSHRPLFDYYYHRRLLP 322
PR +RP+F+ Y++ RL+P
Sbjct: 80 PRGYRPIFECYWNGRLIP 97
>SB_5050| Best HMM Match : SSF (HMM E-Value=0.001)
Length = 364
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 429 KCLKILVDFLVMYVSKETNMKEYEQVYTLGRQLYEVLRSIFV 554
K + + LV Y+S T + ++YT G Q Y ++ S F+
Sbjct: 49 KVWPVAISLLVSYLSAITLLGVPSEIYTYGAQYYVLIISYFI 90
>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 834
Score = 27.9 bits (59), Expect = 9.0
Identities = 24/88 (27%), Positives = 42/88 (47%)
Frame = -3
Query: 400 FKPSTVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFKVSKGLMAFIKSSFCSGVV 221
+K S++Y SS + L SSPL +S+C S S++K S + S + S +
Sbjct: 722 YKSSSLYKSSSLYKSSALYKSSPLYKCSSLCK----SSSLYKSSP--LHKSSSLYKSSYL 775
Query: 220 NGKSIEKLSSSVHSSGTLFRRNVTFLGS 137
S SS ++ S +L++ + + S
Sbjct: 776 YKSSYLYKSSFLYKSSSLYKSSFVYKSS 803
>SB_53810| Best HMM Match : DUF1542 (HMM E-Value=3.9)
Length = 560
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 243 DFMNAIKPFETLNIESDIIKTEQTDAPAT-SGDDNNNRKVVDANEDEYTVDGLKLKS 410
D +N + NI SD + DA +GDD+N DAN+D+ ++ L+S
Sbjct: 425 DDINGDDDADDENINSDDADDDHDDADDNINGDDDNIDGDNDANDDDDNINDCALRS 481
>SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 656
Score = 27.9 bits (59), Expect = 9.0
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3
Query: 330 SGDDNNN-RKVVDANEDEYTVDGLKLKSKYVAYYKCLKILVDFLVMYVSKETNMKEYEQV 506
SGD N VDA ++E D ++ Y + +K++VDF M + +MK+++
Sbjct: 215 SGDTNETVSNGVDAGDEEDESDKSEISQVYEIATR-MKMMVDFQDMENAGPAHMKKFKIK 273
Query: 507 YTLGRQLYE 533
T+G + E
Sbjct: 274 ATVGPYMTE 282
>SB_10519| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 873
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 310 CSVLIISDSIFKVSKGLMAFIKSSFCSGVVNGKSIEK 200
C + + DS+ +V K L F+K S CS +N +S+ K
Sbjct: 564 CVINELPDSVNRVMKYLFKFLKHSICS--LNARSLVK 598
>SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11)
Length = 2297
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +3
Query: 255 AIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDANEDEYTVDGLKL 404
++ P + +ES +++T D G+D +RK+V + V+ K+
Sbjct: 1479 SVDPEQIQVVESSVVETLDEDFDKMFGEDPGDRKIVKTKQTVMKVESTKV 1528
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,089,593
Number of Sequences: 59808
Number of extensions: 446582
Number of successful extensions: 1418
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1411
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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