Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n04
         (732 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles ...    24   4.2  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   7.4  

>M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 442

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 570 LWLERNTHEFDNNTDKIL 623
           LWL +N +EF N T+ +L
Sbjct: 82  LWLCKNCNEFRNGTNSLL 99


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
 Frame = -3

Query: 226  VVNGKSIEKLSSSVHSSGTLF-----RRNVTF-LGSFSSGI 122
            +V+ + +EK++++VH SG  F     R+  TF +G F   +
Sbjct: 987  MVDWEFVEKIATNVHRSGPTFIPDEARKGYTFDVGKFRDAV 1027



 Score = 23.4 bits (48), Expect = 7.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 390  PPCTRPRSHRPLFDYYYHRR 331
            P  T P S+   F+ YYHR+
Sbjct: 1052 PKSTFPGSNYATFEEYYHRK 1071


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 725,238
Number of Sequences: 2352
Number of extensions: 15445
Number of successful extensions: 34
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74844540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)