Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n04
         (732 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X82641-1|CAA57963.1|  643|Drosophila melanogaster alpha 1,2 mann...    34   0.23 
AE014298-1434|AAF46571.3|  643|Drosophila melanogaster CG32684-P...    34   0.23 
X03636-1|CAA27285.1| 1127|Drosophila melanogaster per protein pr...    31   1.6  
M30114-2|AAA28752.1| 1122|Drosophila melanogaster biological clo...    31   1.6  
M30114-1|AAA28754.1| 1218|Drosophila melanogaster biological clo...    31   1.6  
AL024485-7|CAA19677.1| 1156|Drosophila melanogaster EG:155E2.4,F...    31   1.6  
AL024485-5|CAA19679.1| 1116|Drosophila melanogaster EG:155E2.4,F...    31   1.6  
AL024485-4|CAA19678.1| 1212|Drosophila melanogaster EG:155E2.4,F...    31   1.6  
AF033029-1|AAB87476.1| 1224|Drosophila melanogaster period clock...    31   1.6  
AE014298-440|AAF45804.1| 1218|Drosophila melanogaster CG2647-PA ...    31   1.6  
AB029252-1|BAB15926.1|  143|Drosophila melanogaster period protein.    31   1.6  
AB029251-1|BAB15925.1|  143|Drosophila melanogaster period protein.    31   1.6  
AB029250-1|BAB15924.1|  143|Drosophila melanogaster period protein.    31   1.6  
AE014134-2809|AAF53588.1| 1441|Drosophila melanogaster CG15134-P...    31   2.1  
AY122110-1|AAM52622.1|  590|Drosophila melanogaster GH12419p pro...    29   4.9  
AE014298-3087|AAZ52506.1|  590|Drosophila melanogaster CG11566-P...    29   4.9  

>X82641-1|CAA57963.1|  643|Drosophila melanogaster alpha 1,2
           mannosidase protein.
          Length = 643

 Score = 33.9 bits (74), Expect = 0.23
 Identities = 20/55 (36%), Positives = 31/55 (56%)
 Frame = +3

Query: 33  NIQFQSLINLLNLQATTIMSLNSNKIKADLIPDENDPKNVTLRLNSVPEECTDDD 197
           NI   ++I L    A+  +S N N+IK +L    N P+NV L+LN+   +  DD+
Sbjct: 34  NINLSNIIRLNEKVASDSVSNNENQIK-ELNYVNNHPRNVYLKLNASSRDDEDDE 87


>AE014298-1434|AAF46571.3|  643|Drosophila melanogaster CG32684-PB,
           isoform B protein.
          Length = 643

 Score = 33.9 bits (74), Expect = 0.23
 Identities = 20/55 (36%), Positives = 31/55 (56%)
 Frame = +3

Query: 33  NIQFQSLINLLNLQATTIMSLNSNKIKADLIPDENDPKNVTLRLNSVPEECTDDD 197
           NI   ++I L    A+  +S N N+IK +L    N P+NV L+LN+   +  DD+
Sbjct: 34  NINLSNIIRLNEKVASDSVSNNENQIK-ELNYVNNHPRNVYLKLNASSRDDEDDE 87


>X03636-1|CAA27285.1| 1127|Drosophila melanogaster per protein
            protein.
          Length = 1127

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 312  TDAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 431
            +D P +S +  NN+K  D+N +   +DG    S Y ++ K
Sbjct: 1044 SDPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYSSFIK 1083


>M30114-2|AAA28752.1| 1122|Drosophila melanogaster biological clock
            protein B protein.
          Length = 1122

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 312  TDAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 431
            +D P +S +  NN+K  D+N +   +DG    S Y ++ K
Sbjct: 1039 SDPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYSSFIK 1078


>M30114-1|AAA28754.1| 1218|Drosophila melanogaster biological clock
            protein A protein.
          Length = 1218

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 312  TDAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 431
            +D P +S +  NN+K  D+N +   +DG    S Y ++ K
Sbjct: 1135 SDPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYSSFIK 1174


>AL024485-7|CAA19677.1| 1156|Drosophila melanogaster
            EG:155E2.4,FBgn0003068;per protein.
          Length = 1156

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 312  TDAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 431
            +D P +S +  NN+K  D+N +   +DG    S Y ++ K
Sbjct: 1073 SDPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYSSFIK 1112


>AL024485-5|CAA19679.1| 1116|Drosophila melanogaster
            EG:155E2.4,FBgn0003068;per protein.
          Length = 1116

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 312  TDAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 431
            +D P +S +  NN+K  D+N +   +DG    S Y ++ K
Sbjct: 1033 SDPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYSSFIK 1072


>AL024485-4|CAA19678.1| 1212|Drosophila melanogaster
            EG:155E2.4,FBgn0003068;per protein.
          Length = 1212

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 312  TDAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 431
            +D P +S +  NN+K  D+N +   +DG    S Y ++ K
Sbjct: 1129 SDPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYSSFIK 1168


>AF033029-1|AAB87476.1| 1224|Drosophila melanogaster period clock
            protein protein.
          Length = 1224

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 312  TDAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 431
            +D P +S +  NN+K  D+N +   +DG    S Y ++ K
Sbjct: 1141 SDPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYSSFIK 1180


>AE014298-440|AAF45804.1| 1218|Drosophila melanogaster CG2647-PA
            protein.
          Length = 1218

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 312  TDAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 431
            +D P +S +  NN+K  D+N +   +DG    S Y ++ K
Sbjct: 1135 SDPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYSSFIK 1174


>AB029252-1|BAB15926.1|  143|Drosophila melanogaster period protein.
          Length = 143

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 312 TDAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 431
           +D P +S +  NN+K  D+N +   +DG    S Y ++ K
Sbjct: 66  SDPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYSSFIK 105


>AB029251-1|BAB15925.1|  143|Drosophila melanogaster period protein.
          Length = 143

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 312 TDAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 431
           +D P +S +  NN+K  D+N +   +DG    S Y ++ K
Sbjct: 66  SDPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYPSFIK 105


>AB029250-1|BAB15924.1|  143|Drosophila melanogaster period protein.
          Length = 143

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 312 TDAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 431
           +D P +S +  NN+K  D+N +   +DG    S Y ++ K
Sbjct: 66  SDPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYSSFIK 105


>AE014134-2809|AAF53588.1| 1441|Drosophila melanogaster CG15134-PA
           protein.
          Length = 1441

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 28/86 (32%), Positives = 43/86 (50%)
 Frame = -3

Query: 298 IISDSIFKVSKGLMAFIKSSFCSGVVNGKSIEKLSSSVHSSGTLFRRNVTFLGSFSSGIK 119
           I+ DSI K+    + F     C GV+  + I K S++  SS   F  N++ +G+F S I+
Sbjct: 748 IMQDSI-KLLDAHLIFEPLLTCLGVMPQQMINKFSNADISSLENFGTNLSLIGTFDS-IR 805

Query: 118 SALILLELSDIMVVACKFNKLIKD*N 41
             +++ E  D    A K  KL K  N
Sbjct: 806 VDIVVSEAGDKKNSAQKPAKLNKKSN 831


>AY122110-1|AAM52622.1|  590|Drosophila melanogaster GH12419p
           protein.
          Length = 590

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +3

Query: 12  KMKINLCNIQFQSLINLLNLQATTIMSLNSNKIKADLIPDENDPKNVTLRLNSVPEE 182
           K  ++ CN+  +S    LN +  T  S++S  + A L+P   DP         +P+E
Sbjct: 168 KPAVSKCNLHSRSFAKSLN-ELCTDTSVSSTHVPAPLLPSAADPLPAPALFADLPQE 223


>AE014298-3087|AAZ52506.1|  590|Drosophila melanogaster CG11566-PA
           protein.
          Length = 590

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +3

Query: 12  KMKINLCNIQFQSLINLLNLQATTIMSLNSNKIKADLIPDENDPKNVTLRLNSVPEE 182
           K  ++ CN+  +S    LN +  T  S++S  + A L+P   DP         +P+E
Sbjct: 168 KPAVSKCNLHSRSFAKSLN-ELCTDTSVSSTHVPAPLLPSAADPLPAPALFADLPQE 223


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,951,435
Number of Sequences: 53049
Number of extensions: 638156
Number of successful extensions: 2418
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2418
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3293648160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)