Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n04
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77662-13|CAD54139.2|  257|Caenorhabditis elegans Hypothetical p...    34   0.12 
Z77662-12|CAB01202.2|  338|Caenorhabditis elegans Hypothetical p...    34   0.12 
Z81564-5|CAB04569.1|  656|Caenorhabditis elegans Hypothetical pr...    31   0.64 
Z81483-3|CAB03961.1|  152|Caenorhabditis elegans Hypothetical pr...    31   0.84 
Z81460-3|CAB03829.1| 1228|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AC024817-9|ABQ13055.1|   97|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z81062-3|CAB02948.2|  325|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AC024859-3|AAK29969.2|  871|Caenorhabditis elegans Hypothetical ...    29   2.6  
U70849-7|AAF99925.2|  332|Caenorhabditis elegans Collagen protei...    29   3.4  
U50067-5|AAY86219.1|  306|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical ...    28   7.8  
AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical...    28   7.8  
AC084197-23|AAM44389.1|  610|Caenorhabditis elegans Hypothetical...    28   7.8  

>Z77662-13|CAD54139.2|  257|Caenorhabditis elegans Hypothetical
           protein F47B8.9b protein.
          Length = 257

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 568 LNGSSTKMLRKTS-YNCLPNVYTCSYSFMLVSLLTYITKKSTSIFKHL*YA 419
           LNG+S ++   T+ Y    NV  C     L+S+ T+I  K  +I KH+ YA
Sbjct: 6   LNGASPEVATTTAIYAWWNNVAACLILIPLISISTFILLKGKTILKHMKYA 56


>Z77662-12|CAB01202.2|  338|Caenorhabditis elegans Hypothetical
           protein F47B8.9a protein.
          Length = 338

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 568 LNGSSTKMLRKTS-YNCLPNVYTCSYSFMLVSLLTYITKKSTSIFKHL*YA 419
           LNG+S ++   T+ Y    NV  C     L+S+ T+I  K  +I KH+ YA
Sbjct: 6   LNGASPEVATTTAIYAWWNNVAACLILIPLISISTFILLKGKTILKHMKYA 56


>Z81564-5|CAB04569.1|  656|Caenorhabditis elegans Hypothetical
           protein K05C4.5 protein.
          Length = 656

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 22/95 (23%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
 Frame = +3

Query: 57  NLLNLQATTIMSLNSNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQ 236
           ++L++++ T++S     +KA+    EN+   + +    + EE   + +    +  +   +
Sbjct: 558 SILDVESGTVVSAQDGPLKANKKQRENEDTRLLVNGMRLREEVEQNGD---GMSPSKRTR 614

Query: 237 KDDFMNAIKPFETLNIESDIIKTEQT--DAPATSG 335
           ++ F N I PF+++N  S I++ E T  + P T+G
Sbjct: 615 RNSFKNEIPPFQSMN--SRIVQLEVTGDEIPKTAG 647


>Z81483-3|CAB03961.1|  152|Caenorhabditis elegans Hypothetical
           protein C43D7.5 protein.
          Length = 152

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = +3

Query: 147 NVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPA 326
           NV  ++++  + C + + +S      T ++KD+F N     +T+N   +    E+ D   
Sbjct: 7   NVDTKVDNRKDNCDNTNTYS-----HTVDRKDNFDNTTTNTKTVNRNDNCNNQEEGDVNM 61

Query: 327 TSGDDN-NNRKVVDANEDEYTV 389
              +DN NNR+  ++    Y++
Sbjct: 62  YRRNDNCNNREATNSRSANYSI 83


>Z81460-3|CAB03829.1| 1228|Caenorhabditis elegans Hypothetical
           protein C04A11.3 protein.
          Length = 1228

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 261 KPFETLNIESDIIKTEQTDAPAT-SGDDNNNRKVVDANEDEYTVDGLKLKSKYV 419
           KP  T +  +D+ KT    AP    G  + NR+ +      Y +DG+++ S  V
Sbjct: 767 KPVPTPSTSTDVQKTNSNVAPRPLGGRKDGNRQTITKKTRTYMIDGVQVTSTTV 820


>AC024817-9|ABQ13055.1|   97|Caenorhabditis elegans Hypothetical
           protein Y54G2A.52 protein.
          Length = 97

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -1

Query: 729 NPISCSRNW**YL*TCTFSICLYR---PAQV-SIRSVKFLKFCLYCCQIRACC 583
           NP++C  N+  Y   C    CL     PA + +I ++    FCL  C    CC
Sbjct: 43  NPLNCPSNFIYYFECCANECCLRTQVVPAVIIAIGAIFMTGFCLVSCVAYCCC 95


>Z81062-3|CAB02948.2|  325|Caenorhabditis elegans Hypothetical
           protein F15A4.4 protein.
          Length = 325

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 39/159 (24%), Positives = 71/159 (44%)
 Frame = -3

Query: 613 SVLLSNSCVLRSSHSLNGSSTKMLRKTSYNCLPNVYTCSYSFMLVSLLTYITKKSTSIFK 434
           ++LLS   +  S    N S  K ++  S +   ++      F+L++L   I   S S++K
Sbjct: 162 NLLLSRMYIFPSYGGFNASYVKYVQWASLSMFQSI------FLLIALCFTIICSSVSLYK 215

Query: 433 HL*YATYFDLSFKPSTVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFKVSKGLMA 254
            +        S + S  + S F S  F ++  S L+     C V +  + ++ + +   A
Sbjct: 216 LIILPDRIK-SAEKSLCFVSLFYSIAFLVVAVSQLIF--VFCEVCL-KNRLYLLFQ-FFA 270

Query: 253 FIKSSFCSGVVNGKSIEKLSSSVHSSGTLFRRNVTFLGS 137
           F   +  S V+   S  +LS+ +  SGT +RR  +  GS
Sbjct: 271 FDFLTVGSAVIIMLSSPQLSNFLGFSGTFYRRKASPPGS 309


>AC024859-3|AAK29969.2|  871|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.10 protein.
          Length = 871

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 34/150 (22%), Positives = 67/150 (44%), Gaps = 4/150 (2%)
 Frame = -3

Query: 622 KILSVLLSNSCVLRSSHSLNGSSTKMLRKTSYNCLPNVYTCSYSFMLVSLLTYITK--KS 449
           K + ++  N  V     S  G S + +  TS+  LP +++ ++  + ++    +TK  + 
Sbjct: 512 KSMDLVSENISVQNKEVSTTGLSARPICDTSFRILPILFSPAFFKVEIAHSKSLTKLYQQ 571

Query: 448 TSIFKHL*Y--ATYFDLSFKPSTVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFK 275
            SIF  + Y  AT+  L+   S+ +  S  S   R L  S   +   V ++    D  + 
Sbjct: 572 CSIFASVSYSDATWEPLNDLDSSYFEMSAHSDNERALAVSHHASKVHVIAI----DENWP 627

Query: 274 VSKGLMAFIKSSFCSGVVNGKSIEKLSSSV 185
           +    ++   S+ C+  +NG S   L+ +V
Sbjct: 628 LPVVEISLQSSAQCASTINGASPAALAVTV 657


>U70849-7|AAF99925.2|  332|Caenorhabditis elegans Collagen protein
           111 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 282 IESDIIKTEQTDAPATSGDDNNNR-KVVDANEDEYTVDGLKLK 407
           +ES +I  E  +     G D + R KVV+ +++E T D  K +
Sbjct: 288 VESSVISQEVPETGYGDGGDKSKREKVVETHQEEQTYDSFKFE 330


>U50067-5|AAY86219.1|  306|Caenorhabditis elegans Hypothetical
           protein C18F3.4 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +3

Query: 111 KADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETL-NIE 287
           + +L  D ND +  T   NSV E   DD++ S +  L+ P ++ +      P  +L  I 
Sbjct: 54  QCNLRDDPNDDQPTTSS-NSVKESINDDESNSENNKLSPPRRQSN------PHSSLPAIS 106

Query: 288 SDIIKTEQTDAPATSGDDNN 347
           S  +K E TD+   S   N+
Sbjct: 107 SSTVKNEPTDSWTPSALSND 126


>AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical
           protein Y53H1A.1 protein.
          Length = 613

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +3

Query: 99  SNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIK 263
           + K K D   DE  P+N    + +   E  +DDN S D      E+++ F+  +K
Sbjct: 312 AGKSKFDSSSDEESPENEKFPVGNGKSEYQEDDNDSED---DLEERREQFIRCVK 363


>AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12a protein.
          Length = 507

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +3

Query: 225 TPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDANEDEY 383
           TPE+    M+   P +T  I   II TE  D+P+        RK  D   +E+
Sbjct: 326 TPERYTQHMSPNLPLQTATIAPLIIPTENYDSPSYR-QPAIKRKATDLTNEEH 377


>AC084197-23|AAM44389.1|  610|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.33 protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 126 PDENDPKNVTLRLNSVPEECTDDD 197
           PD N   N  +RL  VP  C +DD
Sbjct: 149 PDSNGEVNHVIRLRGVPWSCKEDD 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,959,573
Number of Sequences: 27780
Number of extensions: 346105
Number of successful extensions: 1142
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)