Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n04
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   3.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.2  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   9.0  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = -2

Query: 716 VQEIGDDIFERARFQFVFIGQRKFQ 642
           +++I  +I+ER   ++++I   K+Q
Sbjct: 357 IKQISSNIYERQNNEYIWIVSNKYQ 381


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 108 IKADLIPDENDP 143
           +K +LIPD+NDP
Sbjct: 190 LKDNLIPDKNDP 201


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 121 KSALILLELSDIMVVACKFNKLI 53
           KS + ++ELSD+    CK N+ +
Sbjct: 389 KSKMEVMELSDLHHPNCKINRKV 411


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 546 CCAKPRTTVCLTCTLARIL 490
           CC   R + C+T T A  L
Sbjct: 70  CCGAIRESHCMTITFASFL 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,834
Number of Sequences: 438
Number of extensions: 3558
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)