Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10n04
(732 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g32230.2 68414.m03965 WWE domain-containing protein / ceo pro... 36 0.028
At1g32230.1 68414.m03964 WWE domain-containing protein / ceo pro... 36 0.028
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01... 32 0.34
At2g33010.1 68415.m04045 ubiquitin-associated (UBA)/TS-N domain-... 32 0.45
At3g42100.1 68416.m04322 AT hook motif-containing protein-relate... 31 1.0
At1g63120.1 68414.m07133 rhomboid family protein contains PFAM d... 30 1.4
At5g52280.1 68418.m06488 protein transport protein-related low s... 30 1.8
At4g26630.1 68417.m03837 expressed protein 29 3.2
At2g45160.1 68415.m05622 scarecrow transcription factor family p... 29 4.2
At1g28440.1 68414.m03496 leucine-rich repeat transmembrane prote... 29 4.2
At1g32190.1 68414.m03959 expressed protein 28 5.6
At5g58830.1 68418.m07372 subtilase family protein contains simil... 28 7.3
At5g03000.1 68418.m00245 kelch repeat-containing F-box family pr... 28 7.3
At4g20850.1 68417.m03025 subtilase family protein contains simil... 28 7.3
At2g26470.1 68415.m03176 expressed protein contains PF02586: Unc... 28 7.3
At5g30495.2 68418.m03660 expressed protein 27 9.7
At5g30495.1 68418.m03659 expressed protein 27 9.7
At3g29710.1 68416.m03745 hypothetical protein contains Pfam prof... 27 9.7
At3g13280.1 68416.m01672 expressed protein contains Pfam profile... 27 9.7
At2g04030.2 68415.m00372 heat shock protein, putative strong sim... 27 9.7
At2g04030.1 68415.m00371 heat shock protein, putative strong sim... 27 9.7
At1g54770.1 68414.m06245 expressed protein 27 9.7
At1g18950.1 68414.m02358 aminoacyl-tRNA synthetase family contai... 27 9.7
>At1g32230.2 68414.m03965 WWE domain-containing protein / ceo
protein, putative (CEO) contains Pfam domain, PF02825:
WWE domain; identical to cDNA for ceo protein (ceo gene)
GI:11044956
Length = 588
Score = 35.9 bits (79), Expect = 0.028
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Frame = +3
Query: 126 PDENDPKNVTLRLN------SVP----EECTDD--DNFSIDLPLTTPEQKDDFMNAIKPF 269
P +N P ++ LRL P EEC+D+ DN D+PL + + A +
Sbjct: 183 PKQNAPHDIKLRLEIDVNGGETPRLNLEECSDESGDNMMDDVPLAQRSSNEHYDEATEDS 242
Query: 270 ETLNIESDIIKTEQTDAPATSGDDNNNRKVVD 365
+ +E+ + K ++TDA SG +V+D
Sbjct: 243 CSRKLEAAVSKWDETDAIVVSGAKLTGSEVLD 274
>At1g32230.1 68414.m03964 WWE domain-containing protein / ceo
protein, putative (CEO) contains Pfam domain, PF02825:
WWE domain; identical to cDNA for ceo protein (ceo gene)
GI:11044956
Length = 589
Score = 35.9 bits (79), Expect = 0.028
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Frame = +3
Query: 126 PDENDPKNVTLRLN------SVP----EECTDD--DNFSIDLPLTTPEQKDDFMNAIKPF 269
P +N P ++ LRL P EEC+D+ DN D+PL + + A +
Sbjct: 183 PKQNAPHDIKLRLEIDVNGGETPRLNLEECSDESGDNMMDDVPLAQRSSNEHYDEATEDS 242
Query: 270 ETLNIESDIIKTEQTDAPATSGDDNNNRKVVD 365
+ +E+ + K ++TDA SG +V+D
Sbjct: 243 CSRKLEAAVSKWDETDAIVVSGAKLTGSEVLD 274
>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM
TIGR01612: reticulocyte binding protein; contains
TIGRFAM TIGR00864: polycystin cation channel protein;
similar to fimbriae-associated protein Fap1
[Streptococcus parasanguinis] (GI:3929312)
Length = 1498
Score = 32.3 bits (70), Expect = 0.34
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Frame = +3
Query: 189 DDDNFSIDLPLTTPEQKDDFMNA--IKPFETLNIESDIIKTE--QTDAPATSGDDNNNRK 356
+D + S D DDF+ + +KP + N+E D+ + E + DAP+ + DD
Sbjct: 52 NDTDGSYDFITENDTVGDDFVESDYVKPVDDANVEKDLKEGENVKVDAPSIADDD----- 106
Query: 357 VVDANEDEYTVDGLKLKS 410
V+ ++D T++ +L+S
Sbjct: 107 VLGVSQDSQTLEKSELES 124
>At2g33010.1 68415.m04045 ubiquitin-associated (UBA)/TS-N
domain-containing protein contains Pfam profile PF00627:
UBA/TS-N domain
Length = 649
Score = 31.9 bits (69), Expect = 0.45
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = -3
Query: 334 PLVAGASVCSVLIISDSIFKVSKGLMAFIKSSFCSGVVNGKSIEKLSSSV-HSSGTLFRR 158
P+++ +S VLI S S +S GL+ F+K F N I+ S V GTL +
Sbjct: 258 PIMSSSSQVQVLIFSFSALYLSSGLLCFLKIVFTKKGTNSMLIDAHRSFVFDDEGTLEKT 317
Query: 157 NVTFLGSFSS 128
+ GS SS
Sbjct: 318 RIQ--GSSSS 325
>At3g42100.1 68416.m04322 AT hook motif-containing protein-related
very low similarity to SP|Q9UUA2 DNA repair and
recombination protein pif1, mitochondrial precursor
{Schizosaccharomyces pombe}; weak hit to Pfam profile
PF02178: AT hook motif
Length = 1752
Score = 30.7 bits (66), Expect = 1.0
Identities = 23/76 (30%), Positives = 38/76 (50%)
Frame = +3
Query: 210 DLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDANEDEYTV 389
DL LT E ++ + I+ N + + + + P+ G DN+NR VVD E Y +
Sbjct: 1201 DLKLTLAEIRNYTLQEIEKIMLRN-GATLKEIQDFPQPSREGIDNSNRLVVD--ELRYNI 1257
Query: 390 DGLKLKSKYVAYYKCL 437
D LK K+ +++ L
Sbjct: 1258 DS-NLKEKHDEWFQML 1272
>At1g63120.1 68414.m07133 rhomboid family protein contains PFAM
domain PF01694, Rhomboid family
Length = 317
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 529 TRFCAAFLSTSRSNCGWNATRTNLTTIQTKF 621
T FC F+ R GW A+RTN + + K+
Sbjct: 235 TGFCLGFVLLVRPQYGWEASRTNTSRTKRKY 265
>At5g52280.1 68418.m06488 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 853
Score = 29.9 bits (64), Expect = 1.8
Identities = 40/203 (19%), Positives = 88/203 (43%), Gaps = 4/203 (1%)
Frame = +3
Query: 45 QSLINLLNLQATTIMSLNSNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLT 224
+ L +L + I SLNS +A + + + ++++ ++ D D + +D
Sbjct: 387 RDLNEMLEQKNNEISSLNSLLEEAKKLEEHKGMDSGNNEIDTLKQQIEDLD-WELDSYKK 445
Query: 225 TPEQKDDFMNAI-KPFETL---NIESDIIKTEQTDAPATSGDDNNNRKVVDANEDEYTVD 392
E+++ ++ + + +E+L N ++ K EQ + + +++ ++D + + +
Sbjct: 446 KNEEQEILLDELTQEYESLKEENYKNVSSKLEQQECSNAEDEYLDSKDIIDELKSQIEIL 505
Query: 393 GLKLKSKYVAYYKCLKILVDFLVMYVSKETNMKEYEQVYTLGRQLYEVLRSIFVDEPFKL 572
KLK + + Y +CL I V+ L V KE + +Q + ++R E +
Sbjct: 506 EGKLKQQSLEYSECL-ITVNELESQV-KELKKELEDQAQAYDEDIDTMMREKTEQEQRAI 563
Query: 573 WLERNTHEFDNNTDKILETLQSE 641
E N + N E LQ +
Sbjct: 564 KAEENLRKTRWNNAITAERLQEK 586
>At4g26630.1 68417.m03837 expressed protein
Length = 763
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +3
Query: 231 EQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVV--DANEDE 380
E++D N K E E D K E D S D+N+N KV DA EDE
Sbjct: 216 EKEDKEENKTKEVEAAKAEVDESKVE--DEKEGSEDENDNEKVESKDAKEDE 265
>At2g45160.1 68415.m05622 scarecrow transcription factor family
protein
Length = 640
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 303 TEQTDAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYKCLKILVD 452
T T+ T+GDDNNN K D+ +DG+ S L++++D
Sbjct: 85 TTVTNTTVTAGDDNNNNKCSQMGLDD--LDGVLSASSPGQEQSILRLIMD 132
>At1g28440.1 68414.m03496 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor kinase GI:4105699
from [Arabidopsis thaliana]
Length = 996
Score = 28.7 bits (61), Expect = 4.2
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Frame = -3
Query: 337 SPLVAGASVCSVLIISDSIFKVSK----GLMAFIKSSFCSGVVNGKSIEKLSSSVHSSGT 170
S + GAS S+LI+S++ F S G + + SG S+ S+ GT
Sbjct: 437 SKSIGGASNLSLLILSNNEFTGSLPEEIGSLDNLNQLSASGNKFSGSLPDSLMSLGELGT 496
Query: 169 LFRRNVTFLGSFSSGIKSALILLELS 92
L F G +SGIKS L EL+
Sbjct: 497 LDLHGNQFSGELTSGIKSWKKLNELN 522
>At1g32190.1 68414.m03959 expressed protein
Length = 422
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -1
Query: 624 LKFCLYCCQIRACCVPATV*TARRQKCCAKPRTTVCLTCTLARILSC 484
LK C CC+ +C T + C KP+ C C+ + L C
Sbjct: 336 LKGCFSCCKKPSCVSSCCCPTFKCSSCFGKPK---CPKCSCWKCLKC 379
>At5g58830.1 68418.m07372 subtilase family protein contains
similarity to prepro-cucumisin GI:807698 from [Cucumis
melo]
Length = 671
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 202 KLSSSVHSSGTLFRRNVTFLGSFSSGIKSALIL 104
KLS S S F+R VT LG+ +S KS ++L
Sbjct: 574 KLSESNSSFTVTFKRTVTNLGTANSTYKSKIVL 606
>At5g03000.1 68418.m00245 kelch repeat-containing F-box family
protein similar to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 354
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +3
Query: 21 INLCNIQFQSLINLLNLQAT-TIMSLNSNKIKADLIPDENDPKNVTLRLNSVPEE 182
++L N +FQSLI +L+AT + + + N + L ++N+P L +P+E
Sbjct: 63 LSLVNKEFQSLIASPDLEATRSRIGVTENHLYVCLESNKNNPNPRWFTLAPIPKE 117
>At4g20850.1 68417.m03025 subtilase family protein contains similarity
to Tripeptidyl-peptidase II (EC 3.4.14.10) (TPP-II)
(Tripeptidyl aminopeptidase) (Swiss-Prot:P29144) [Homo
sapiens]
Length = 1380
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/78 (24%), Positives = 39/78 (50%)
Frame = +3
Query: 402 LKSKYVAYYKCLKILVDFLVMYVSKETNMKEYEQVYTLGRQLYEVLRSIFVDEPFKLWLE 581
LKS+Y Y L +++ L+ + +E++ EV+RS+ VDE + L+
Sbjct: 1177 LKSEYPDYTPLLAKILEGLLSRSDAGDKISHHEEIIEAAN---EVVRSVDVDELARFLLD 1233
Query: 582 RNTHEFDNNTDKILETLQ 635
+ E D+ +K+ + ++
Sbjct: 1234 KTEPE-DDEAEKLKKKME 1250
>At2g26470.1 68415.m03176 expressed protein contains PF02586:
Uncharacterized ACR, COG2135; weak similarity to NF-M
protein (GI:205688) [Rattus norvegicus]
Length = 487
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 177 EECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDI 296
E + D N +DL +KD F ++IK E L+ E D+
Sbjct: 260 ETKSTDANIIVDLKKEPTAEKDTFSDSIKKIEELDGEKDM 299
>At5g30495.2 68418.m03660 expressed protein
Length = 196
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 135 NDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDD 245
NDPK + + ++ T + F + P TPE K D
Sbjct: 57 NDPKKINKMIRKQIKDTTGSNWFDMPAPTMTPELKRD 93
>At5g30495.1 68418.m03659 expressed protein
Length = 196
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 135 NDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDD 245
NDPK + + ++ T + F + P TPE K D
Sbjct: 57 NDPKKINKMIRKQIKDTTGSNWFDMPAPTMTPELKRD 93
>At3g29710.1 68416.m03745 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 669
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +3
Query: 177 EECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESD-IIKTEQTDAPATSGDDNNNR 353
EE + + P+ E++DD + I+ E + ESD + E++ D+ +
Sbjct: 133 EETETNKELACANPVEEAERQDDGLTVIEEEEERSSESDEDVNVEKSVEDEGHEDERDED 192
Query: 354 KVVDANEDEYTVD 392
+V+ + +E T+D
Sbjct: 193 VIVEKSGEERTID 205
>At3g13280.1 68416.m01672 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537; expression
supported by MPSS
Length = 383
Score = 27.5 bits (58), Expect = 9.7
Identities = 28/122 (22%), Positives = 52/122 (42%)
Frame = +3
Query: 42 FQSLINLLNLQATTIMSLNSNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPL 221
F+ L +L T N + + + P+E +P ++ + EEC + L
Sbjct: 265 FKELCKMLEFDGKTCNKGNGSTM-VKIRPEEGNPCFTSVTM----EEC-----MMMMRKL 314
Query: 222 TTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDANEDEYTVDGLK 401
T E + N KP +++ ++ TEQ D P +S +RK + + + T+ +
Sbjct: 315 KTEEAAVEEENPEKPIQSIQVQRSSA-TEQEDKPVSSVAKRASRKSISSCSSQDTILTNR 373
Query: 402 LK 407
LK
Sbjct: 374 LK 375
>At2g04030.2 68415.m00372 heat shock protein, putative strong
similarity to heat shock protein [Arabidopsis thaliana]
GI:1906830; contains Pfam profiles PF02518: ATPase,
histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein, PF00183: Hsp90 protein
Length = 777
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
Frame = +3
Query: 120 LIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIK-PFETLNIESDI 296
LI +E DP N+ R + +DD + ++ + P T +S
Sbjct: 236 LIREETDPDNILRRGTQITLYLREDDKYEFAESTRIKNLVKNYSQFVGFPIYTWQEKSRT 295
Query: 297 IKTEQTDAPATSGDDNNNRKVVDANEDEY 383
I+ E+ D P G++ +K ++Y
Sbjct: 296 IEVEE-DEPVKEGEEGEPKKKKTTKTEKY 323
>At2g04030.1 68415.m00371 heat shock protein, putative strong
similarity to heat shock protein [Arabidopsis thaliana]
GI:1906830; contains Pfam profiles PF02518: ATPase,
histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein, PF00183: Hsp90 protein
Length = 780
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
Frame = +3
Query: 120 LIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIK-PFETLNIESDI 296
LI +E DP N+ R + +DD + ++ + P T +S
Sbjct: 236 LIREETDPDNILRRGTQITLYLREDDKYEFAESTRIKNLVKNYSQFVGFPIYTWQEKSRT 295
Query: 297 IKTEQTDAPATSGDDNNNRKVVDANEDEY 383
I+ E+ D P G++ +K ++Y
Sbjct: 296 IEVEE-DEPVKEGEEGEPKKKKTTKTEKY 323
>At1g54770.1 68414.m06245 expressed protein
Length = 189
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +3
Query: 63 LNLQATTIMSLNSNKIKADLIPD----ENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTP 230
L+L+ + S + K++L+ NDP+ + + ++ T + F + P TP
Sbjct: 22 LDLKTGSTRSKTAESSKSELVDGLCLPPNDPRKINKMIRKQLKDTTGSNWFDMPAPTMTP 81
Query: 231 EQKDD 245
E K D
Sbjct: 82 ELKRD 86
>At1g18950.1 68414.m02358 aminoacyl-tRNA synthetase family contains
aminoacyl-transfer RNA synthetases class-II signature 1,
PROSITE:PS00179
Length = 766
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +3
Query: 225 TPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDANEDEYTVDGLKL 404
T +D NA P ET + E + + +A T+G +NN + D+ V+G+
Sbjct: 675 TMGSQDSEENANDP-ETKSGEEEEPRDVNDNADTTNGKENNQLNKSNGTTDQEEVEGVVG 733
Query: 405 KSKYV 419
K +Y+
Sbjct: 734 KRRYL 738
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,529,124
Number of Sequences: 28952
Number of extensions: 301437
Number of successful extensions: 1100
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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