Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10n03
(243 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P51425 Cluster: 60S ribosomal protein L39; n=9; Poaceae... 95 4e-19
UniRef50_Q96EH5 Cluster: 60S ribosomal protein L39-like; n=113; ... 90 8e-18
UniRef50_A0D4U2 Cluster: Chromosome undetermined scaffold_38, wh... 84 5e-16
UniRef50_Q4N5K7 Cluster: 60S ribosomal protein L39, putative; n=... 82 3e-15
UniRef50_A0BVU9 Cluster: Chromosome undetermined scaffold_130, w... 79 1e-14
UniRef50_A0DH83 Cluster: Chromosome undetermined scaffold_50, wh... 78 4e-14
UniRef50_UPI0001509BE0 Cluster: hypothetical protein TTHERM_0052... 73 1e-12
UniRef50_UPI00006CB3D9 Cluster: Ribosomal L39 protein; n=1; Tetr... 71 7e-12
UniRef50_UPI0000D99F63 Cluster: PREDICTED: similar to 60S riboso... 62 2e-09
UniRef50_Q4RTC8 Cluster: Chromosome 1 SCAF14998, whole genome sh... 62 3e-09
UniRef50_A1CZG2 Cluster: Ribosomal protein L39, putative; n=1; N... 59 2e-08
UniRef50_P13005 Cluster: 50S ribosomal protein L39e; n=10; Archa... 57 7e-08
UniRef50_Q8SQP8 Cluster: 60S ribosomal protein L39; n=1; Encepha... 56 2e-07
UniRef50_UPI00015BAD96 Cluster: LSU ribosomal protein L39E; n=1;... 50 8e-06
UniRef50_Q16VX1 Cluster: Putative uncharacterized protein; n=1; ... 50 8e-06
UniRef50_P54056 Cluster: 50S ribosomal protein L39e; n=19; Archa... 50 1e-05
UniRef50_A7D3F5 Cluster: Ribosomal protein L39e; n=1; Halorubrum... 46 1e-04
UniRef50_A0RW53 Cluster: Ribosomal protein L39; n=2; Thermoprote... 45 3e-04
UniRef50_Q8PYQ5 Cluster: 50S ribosomal protein L39e; n=19; Archa... 42 0.002
UniRef50_O58265 Cluster: Putative uncharacterized protein PH0529... 36 0.23
UniRef50_Q01CG7 Cluster: Chromosome 03 contig 1, DNA sequence; n... 34 0.53
UniRef50_Q01CG8 Cluster: Chromosome 03 contig 1, DNA sequence; n... 34 0.70
UniRef50_O94143 Cluster: Putative uncharacterized protein BUD19;... 34 0.70
UniRef50_A5UNL2 Cluster: Adhesin-like protein; n=1; Methanobrevi... 31 6.5
>UniRef50_P51425 Cluster: 60S ribosomal protein L39; n=9;
Poaceae|Rep: 60S ribosomal protein L39 - Zea mays
(Maize)
Length = 51
Score = 94.7 bits (225), Expect = 4e-19
Identities = 40/49 (81%), Positives = 45/49 (91%)
Frame = +2
Query: 32 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 178
M +HKTF IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49
>UniRef50_Q96EH5 Cluster: 60S ribosomal protein L39-like; n=113;
Eukaryota|Rep: 60S ribosomal protein L39-like - Homo
sapiens (Human)
Length = 51
Score = 90.2 bits (214), Expect = 8e-18
Identities = 39/51 (76%), Positives = 45/51 (88%)
Frame = +2
Query: 32 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 184
MS+HKTF IKR LAKK KQNRPIPQW++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 1 MSSHKTFTIKRFLAKKQKQNRPIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51
>UniRef50_A0D4U2 Cluster: Chromosome undetermined scaffold_38, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_38,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 131
Score = 84.2 bits (199), Expect = 5e-16
Identities = 35/53 (66%), Positives = 42/53 (79%)
Frame = +2
Query: 26 FKMSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 184
FKM AHK+ +K++L K KQNRP+P W R RT NTIRYN+KRRHWRRTKL +
Sbjct: 78 FKMGAHKSLRMKKRLIKANKQNRPLPNWFRYRTDNTIRYNSKRRHWRRTKLNI 130
>UniRef50_Q4N5K7 Cluster: 60S ribosomal protein L39, putative; n=1;
Theileria parva|Rep: 60S ribosomal protein L39, putative
- Theileria parva
Length = 79
Score = 81.8 bits (193), Expect = 3e-15
Identities = 33/54 (61%), Positives = 44/54 (81%)
Frame = +2
Query: 23 LFKMSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 184
L+ + + +T +K+ L KK+KQNRPIP W R++TGN IRYNAKRR+WRRTKLK+
Sbjct: 26 LYTIGSVRTLTLKKHLGKKMKQNRPIPHWFRLKTGNKIRYNAKRRYWRRTKLKV 79
>UniRef50_A0BVU9 Cluster: Chromosome undetermined scaffold_130,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_130,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 137
Score = 79.4 bits (187), Expect = 1e-14
Identities = 33/54 (61%), Positives = 40/54 (74%)
Frame = +2
Query: 23 LFKMSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 184
L AHK+ +K++L K KQNRP+P W R RT NTIRYN+KRRHWRRTKL +
Sbjct: 83 LLNQGAHKSLRMKKRLIKANKQNRPLPNWFRYRTDNTIRYNSKRRHWRRTKLNI 136
>UniRef50_A0DH83 Cluster: Chromosome undetermined scaffold_50, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_50,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 93
Score = 77.8 bits (183), Expect = 4e-14
Identities = 32/49 (65%), Positives = 39/49 (79%)
Frame = +2
Query: 38 AHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 184
AHK+ +K++L K KQNRP+P W R RT NTIRYN+KRRHWRRTKL +
Sbjct: 44 AHKSLRMKKRLIKANKQNRPLPNWFRYRTDNTIRYNSKRRHWRRTKLNI 92
>UniRef50_UPI0001509BE0 Cluster: hypothetical protein
TTHERM_00526400; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00526400 - Tetrahymena
thermophila SB210
Length = 121
Score = 72.9 bits (171), Expect = 1e-12
Identities = 28/52 (53%), Positives = 41/52 (78%)
Frame = +2
Query: 29 KMSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 184
+M A+KT +K++ +K+KQNRP+P W R ++ IRYN+KRR+WRRTKLK+
Sbjct: 69 EMGANKTLNMKKRFGRKIKQNRPLPNWYRYKSDTNIRYNSKRRNWRRTKLKI 120
>UniRef50_UPI00006CB3D9 Cluster: Ribosomal L39 protein; n=1;
Tetrahymena thermophila SB210|Rep: Ribosomal L39 protein
- Tetrahymena thermophila SB210
Length = 89
Score = 70.5 bits (165), Expect = 7e-12
Identities = 27/49 (55%), Positives = 39/49 (79%)
Frame = +2
Query: 38 AHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 184
A+KT +K++ +K+KQNRP+P W R ++ IRYN+KRR+WRRTKLK+
Sbjct: 40 ANKTLNMKKRFGRKIKQNRPLPNWYRYKSDTNIRYNSKRRNWRRTKLKI 88
>UniRef50_UPI0000D99F63 Cluster: PREDICTED: similar to 60S ribosomal
protein L39; n=2; Catarrhini|Rep: PREDICTED: similar to
60S ribosomal protein L39 - Macaca mulatta
Length = 102
Score = 62.1 bits (144), Expect = 2e-09
Identities = 27/40 (67%), Positives = 35/40 (87%)
Frame = +2
Query: 32 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAK 151
MS+ KTF IK+ LA+K KQNRPIPQW++M+TG+ IRYN+K
Sbjct: 1 MSSLKTFKIKQFLAQKQKQNRPIPQWIQMKTGDKIRYNSK 40
>UniRef50_Q4RTC8 Cluster: Chromosome 1 SCAF14998, whole genome
shotgun sequence; n=6; Fungi/Metazoa group|Rep:
Chromosome 1 SCAF14998, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 503
Score = 61.7 bits (143), Expect = 3e-09
Identities = 27/34 (79%), Positives = 30/34 (88%)
Frame = +2
Query: 35 SAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTI 136
S+HKTF IKR LAKK KQNRPIPQW+RM+TGN I
Sbjct: 429 SSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKI 462
>UniRef50_A1CZG2 Cluster: Ribosomal protein L39, putative; n=1;
Neosartorya fischeri NRRL 181|Rep: Ribosomal protein
L39, putative - Neosartorya fischeri (strain ATCC 1020 /
DSM 3700 / NRRL 181)(Aspergillus fischerianus (strain
ATCC 1020 / DSM 3700 / NRRL 181))
Length = 69
Score = 58.8 bits (136), Expect = 2e-08
Identities = 24/34 (70%), Positives = 30/34 (88%)
Frame = +2
Query: 38 AHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIR 139
+HK+F K+KLAK +QNRPIPQW+R+RTGNTIR
Sbjct: 36 SHKSFRTKQKLAKAQRQNRPIPQWIRLRTGNTIR 69
>UniRef50_P13005 Cluster: 50S ribosomal protein L39e; n=10;
Archaea|Rep: 50S ribosomal protein L39e - Sulfolobus
acidocaldarius
Length = 51
Score = 57.2 bits (132), Expect = 7e-08
Identities = 26/51 (50%), Positives = 34/51 (66%)
Frame = +2
Query: 32 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 184
MS HK+ K +L K LK+N PIP WV ++T IR+N RR+WRR LK+
Sbjct: 1 MSKHKSLGKKLRLGKALKRNSPIPAWVIIKTQAEIRFNPLRRNWRRNNLKV 51
>UniRef50_Q8SQP8 Cluster: 60S ribosomal protein L39; n=1;
Encephalitozoon cuniculi|Rep: 60S ribosomal protein L39
- Encephalitozoon cuniculi
Length = 52
Score = 56.0 bits (129), Expect = 2e-07
Identities = 24/51 (47%), Positives = 32/51 (62%)
Frame = +2
Query: 32 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 184
M + KT ++K +L + LK+NR IP W RM + YN RRHWR KLK+
Sbjct: 1 MGSRKTALVKTRLMRALKRNREIPAWKRMMKEHKGEYNRARRHWRSKKLKI 51
>UniRef50_UPI00015BAD96 Cluster: LSU ribosomal protein L39E; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L39E - Ignicoccus hospitalis KIN4/I
Length = 55
Score = 50.4 bits (115), Expect = 8e-06
Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +2
Query: 38 AHKTFIIKR-KLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLK 181
AH + K+ +L KK KQNR +P WV ++T + N RR+WRR K+K
Sbjct: 5 AHYKHVAKKIRLGKKTKQNRALPAWVILKTRRRVTRNPMRRYWRRQKIK 53
>UniRef50_Q16VX1 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 192
Score = 50.4 bits (115), Expect = 8e-06
Identities = 28/58 (48%), Positives = 37/58 (63%)
Frame = +1
Query: 16 NLIVQNVGP*DVYY*AQIGQKAETKQTHSSVGKDAHRKHYSI*R*EASLEKDKAQVVS 189
N ++VGP D A+ QKAE KQTHS+V ++AH KHY + R SLE +A+ VS
Sbjct: 95 NTFDRDVGPQDFPDQAEACQKAEAKQTHSTVDQNAHWKHYPLQRQAPSLETYEAEAVS 152
>UniRef50_P54056 Cluster: 50S ribosomal protein L39e; n=19;
Archaea|Rep: 50S ribosomal protein L39e - Methanococcus
jannaschii
Length = 51
Score = 50.0 bits (114), Expect = 1e-05
Identities = 23/50 (46%), Positives = 34/50 (68%)
Frame = +2
Query: 32 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLK 181
M ++K K +LAK LKQNR +P +V ++T +R++ K R+WRR KLK
Sbjct: 1 MGSNKPLGKKVRLAKALKQNRRVPLFVIVKTRGRVRFHPKMRYWRRKKLK 50
>UniRef50_A7D3F5 Cluster: Ribosomal protein L39e; n=1; Halorubrum
lacusprofundi ATCC 49239|Rep: Ribosomal protein L39e -
Halorubrum lacusprofundi ATCC 49239
Length = 64
Score = 46.4 bits (105), Expect = 1e-04
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +2
Query: 59 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 178
K++LAK +QN +P WV M+T + N KRR+WRR L
Sbjct: 23 KKRLAKAERQNTRVPAWVMMKTDMNVTRNPKRRNWRRNDL 62
>UniRef50_A0RW53 Cluster: Ribosomal protein L39; n=2;
Thermoprotei|Rep: Ribosomal protein L39 - Cenarchaeum
symbiosum
Length = 52
Score = 45.2 bits (102), Expect = 3e-04
Identities = 20/51 (39%), Positives = 30/51 (58%)
Frame = +2
Query: 32 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 184
M + K K +L KK KQ P+P W+ ++T +R N KRR WR T +++
Sbjct: 1 MGSRKPSGRKIRLQKKTKQAAPVPAWIILKTRRGVRTNPKRRAWRSTDVEV 51
>UniRef50_Q8PYQ5 Cluster: 50S ribosomal protein L39e; n=19;
Archaea|Rep: 50S ribosomal protein L39e - Methanosarcina
mazei (Methanosarcina frisia)
Length = 51
Score = 42.3 bits (95), Expect = 0.002
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +2
Query: 59 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 178
K++LAK KQN +P W ++T + + +RRHWRR L
Sbjct: 9 KKRLAKAHKQNSRVPVWAIVKTNRKVVSHPRRRHWRRGSL 48
>UniRef50_O58265 Cluster: Putative uncharacterized protein PH0529;
n=1; Pyrococcus horikoshii|Rep: Putative uncharacterized
protein PH0529 - Pyrococcus horikoshii
Length = 174
Score = 35.5 bits (78), Expect = 0.23
Identities = 25/66 (37%), Positives = 33/66 (50%)
Frame = -1
Query: 228 YRVFIRLHLTHSQAYNLSFVLLQ*RLLALYRIVFPVRILTH*GMGLFCFSFLANLRLIIN 49
Y +F L HS ++LSFVLLQ L + + V +T G LFCF LA+L
Sbjct: 104 YNLFSGLDHPHSP-HSLSFVLLQCLLFGCVKTLLFVLTITQTGTLLFCFMALASLSFFAR 162
Query: 48 VLWADI 31
L+ I
Sbjct: 163 GLFLAI 168
>UniRef50_Q01CG7 Cluster: Chromosome 03 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 03 contig 1, DNA
sequence - Ostreococcus tauri
Length = 567
Score = 34.3 bits (75), Expect = 0.53
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2
Query: 140 YNAKRRHWRRTKL 178
YNAKRRHWRRTKL
Sbjct: 4 YNAKRRHWRRTKL 16
>UniRef50_Q01CG8 Cluster: Chromosome 03 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 03 contig 1, DNA
sequence - Ostreococcus tauri
Length = 138
Score = 33.9 bits (74), Expect = 0.70
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -1
Query: 135 IVFPVRILTH*GMGLFCFSFLANLRLIINVL 43
+V PVR+ H G G FCF F + LI+ VL
Sbjct: 1 MVLPVRMRIHWGSGRFCFCFFPRIFLILKVL 31
>UniRef50_O94143 Cluster: Putative uncharacterized protein BUD19;
n=1; Saccharomyces cerevisiae|Rep: Putative
uncharacterized protein BUD19 - Saccharomyces cerevisiae
(Baker's yeast)
Length = 102
Score = 33.9 bits (74), Expect = 0.70
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = -3
Query: 187 LQLELCPSPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLM 41
L + L SPV+ LSV+++SV + PL SVL F L+++RL+
Sbjct: 13 LDVHLGSSPVSSLSVVTDSVVGSQSDPLWQWSVLLLSLSHFLLDSERLL 61
>UniRef50_A5UNL2 Cluster: Adhesin-like protein; n=1;
Methanobrevibacter smithii ATCC 35061|Rep: Adhesin-like
protein - Methanobrevibacter smithii (strain PS / ATCC
35061 / DSM 861)
Length = 1262
Score = 30.7 bits (66), Expect = 6.5
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -3
Query: 142 ISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLMGRHFEQSSCQNKV 2
I+NSV+C Y NG ++ L +++ R +G +F + +C N +
Sbjct: 198 INNSVTCNDEYGNANGGAVYSLKSDLLVDSCRFVG-NFAKGNCLNAI 243
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,967,975
Number of Sequences: 1657284
Number of extensions: 3636958
Number of successful extensions: 9502
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 9353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9501
length of database: 575,637,011
effective HSP length: 59
effective length of database: 477,857,255
effective search space used: 10035002355
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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