Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n03
         (243 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   2.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    19   6.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    19   6.7  
AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    19   8.8  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 20.6 bits (41), Expect = 2.9
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 7/35 (20%)
 Frame = +2

Query: 92  RPI--PQWVRMRTGNTIRYNAKR-----RHWRRTK 175
           RP+  P  V+ RT   IR+ + R     R+WR+ K
Sbjct: 4   RPVYRPTIVKKRTKKFIRHQSDRYSKLKRNWRKPK 38


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 147 LRGVTGEGQSSSCKLVNVLNVI 212
           +RG      SS   L N LNVI
Sbjct: 18  IRGGVVRENSSGKNLTNTLNVI 39


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 119 ASLPTEEWVCFVSAFWPIC 63
           ASLP   ++  V AF  +C
Sbjct: 296 ASLPPVSYLKAVDAFMSVC 314


>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = -3

Query: 154 PLSVISNSVSCAHPYPLRNGSVLFQLFGQFA 62
           P S+      CA PY  +N   L Q    FA
Sbjct: 13  PKSLKEPCDGCAAPYGYKNIMTLSQDTSHFA 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,755
Number of Sequences: 438
Number of extensions: 1138
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4149981
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)