Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n03
         (243 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31985.1 68417.m04549 60S ribosomal protein L39 (RPL39C)            92   4e-20
At3g02190.1 68416.m00196 60S ribosomal protein L39 (RPL39B) simi...    90   2e-19
At2g25210.1 68415.m03017 60S ribosomal protein L39 (RPL39A)            82   4e-17
At1g52510.1 68414.m05928 hydrolase, alpha/beta fold family prote...    33   0.020
At4g11450.1 68417.m01843 expressed protein                             25   5.3  
At1g67510.1 68414.m07690 leucine-rich repeat family protein cont...    25   5.3  
At5g26260.1 68418.m03133 meprin and TRAF homology domain-contain...    25   7.0  
At2g42980.1 68415.m05332 aspartyl protease family protein contai...    25   7.0  
At4g27350.1 68417.m03925 expressed protein                             25   9.3  
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...    25   9.3  
At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica...    25   9.3  

>At4g31985.1 68417.m04549 60S ribosomal protein L39 (RPL39C)
          Length = 51

 Score = 92.3 bits (219), Expect = 4e-20
 Identities = 37/49 (75%), Positives = 45/49 (91%)
 Frame = +2

Query: 32  MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 178
           M +HK+F+IK+KL KK++QNRPIP W+R+RT NTIRYNAKRRHWRRTKL
Sbjct: 1   MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKL 49


>At3g02190.1 68416.m00196 60S ribosomal protein L39 (RPL39B) similar
           to ribosomal protein L39 GB:P51424 [Arabidopsis
           thaliana]
          Length = 51

 Score = 89.8 bits (213), Expect = 2e-19
 Identities = 36/49 (73%), Positives = 44/49 (89%)
 Frame = +2

Query: 32  MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 178
           M +HK+F+IK+KL KK++QNRPIP W+R+RT N IRYNAKRRHWRRTKL
Sbjct: 1   MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKL 49


>At2g25210.1 68415.m03017 60S ribosomal protein L39 (RPL39A) 
          Length = 44

 Score = 82.2 bits (194), Expect = 4e-17
 Identities = 33/42 (78%), Positives = 39/42 (92%)
 Frame = +2

Query: 53  IIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 178
           +IK+KL KK++QNRPIP W+R+RT NTIRYNAKRRHWRRTKL
Sbjct: 1   MIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKL 42


>At1g52510.1 68414.m05928 hydrolase, alpha/beta fold family protein
           low similarity to SP|P22643 Haloalkane dehalogenase (EC
           3.8.1.5) {Xanthobacter autotrophicus}; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 380

 Score = 33.5 bits (73), Expect = 0.020
 Identities = 22/75 (29%), Positives = 37/75 (49%)
 Frame = -3

Query: 241 FFLTLQGFY*ITFNTFTSLQLELCPSPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFA 62
           FFL +QGF   ++    +L+    PS V  L+++++ ++ + P P     +   LFG+F 
Sbjct: 199 FFLVVQGFLVGSYGLTWALKN---PSKVEKLAILNSPLTVSSPVPGLFKQLRIPLFGEFT 255

Query: 61  LNNKRLMGRHFEQSS 17
             N  L  R  E  S
Sbjct: 256 CQNAILAERFIEGGS 270


>At4g11450.1 68417.m01843 expressed protein 
          Length = 694

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -3

Query: 154 PLSVISNS-VSCAHPYPLRNGSVLFQLFGQFA 62
           PL V+ N  +SC+H  PL       QLF Q A
Sbjct: 554 PLMVLGNPRISCSHDQPLVENQHPLQLFVQGA 585


>At1g67510.1 68414.m07690 leucine-rich repeat family protein
           contains protein kinase domain, Pfam:PF00069; contains
           leucine-rich repeats, Pfam:PF00560
          Length = 719

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +3

Query: 21  DCSKCRPIRRLLLSAN 68
           D +KC+ ++RL+LSAN
Sbjct: 163 DLNKCKQLQRLILSAN 178


>At5g26260.1 68418.m03133 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 351

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 74  KKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 178
           K    NR + +++ +  G   RYN  ++ W  T+L
Sbjct: 133 KLFVHNRKLKKYLSVTDGTVKRYNDAKKEWGFTQL 167


>At2g42980.1 68415.m05332 aspartyl protease family protein contains
           pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 527

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 53  IIKRKLAKKLKQNRPI 100
           IIK K A+K+K+N PI
Sbjct: 416 IIKNKFAEKMKENYPI 431


>At4g27350.1 68417.m03925 expressed protein
          Length = 278

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 166 SPVTPLSVISNSVSCAHPYPLRNGSVLFQLF 74
           S   P+S  +NS + A   P  +G VL QLF
Sbjct: 14  SSTKPISGGNNSAAVAAEIPAGDGPVLVQLF 44


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 62  RKLAKKLKQNRPIPQWVRMRTGNTIRY 142
           +++ KKLK  RPI +W+ + +G  ++Y
Sbjct: 243 KRVMKKLKY-RPIMEWLVVTSGPLLKY 268


>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|Q03468 Excision
           repair protein ERCC-6 (Cockayne syndrome protein CSB)
           {Homo sapiens}; contains PFam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 1187

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 59  KRKLAKKLKQNRPIPQ 106
           KRK  KK K+ RP+P+
Sbjct: 306 KRKAGKKSKKTRPLPE 321


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,897,451
Number of Sequences: 28952
Number of extensions: 82828
Number of successful extensions: 219
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 12,070,560
effective HSP length: 59
effective length of database: 10,362,392
effective search space used: 217610232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)