Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n01
         (385 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    25   0.26 
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          25   0.26 
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   1.4  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   1.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   2.4  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   4.2  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    20   7.4  

>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 25.0 bits (52), Expect = 0.26
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 252 YTSVQIVSVQRHCHVIKHIC 311
           YTS Q+V ++R  H  K++C
Sbjct: 92  YTSSQLVELEREFHRSKYLC 111


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 25.0 bits (52), Expect = 0.26
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 252 YTSVQIVSVQRHCHVIKHIC 311
           YTS Q+V ++R  H  K++C
Sbjct: 112 YTSSQLVELEREFHRSKYLC 131


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = +3

Query: 252 YTSVQIVSVQRHCHVIKHIC 311
           YT+ Q++ +++  H  K++C
Sbjct: 11  YTNTQLLELEKEFHFNKYLC 30


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = +3

Query: 252 YTSVQIVSVQRHCHVIKHIC 311
           YT+ Q++ +++  H  K++C
Sbjct: 142 YTNTQLLELEKEFHFNKYLC 161


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 34  RCPNERCANCANPTAL 81
           + P E CA C N T+L
Sbjct: 723 KVPGECCAICVNATSL 738


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 61  NSRTSRSDSGPVLGSIK 11
           N RT RSD GP +  ++
Sbjct: 273 NPRTYRSDEGPQITELE 289


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 14  DRPQHGAAVRTRGARIAQIQLHSGVHEKRGSSASFIGK*LYR 139
           DRP  G + RTR  +    +  +   E++    +F G  L R
Sbjct: 201 DRPSSGRSPRTRRVKKPGAKQGAPTAEEKRPRTAFSGAQLAR 242


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,007
Number of Sequences: 336
Number of extensions: 1631
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8014124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)