Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n01
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    25   3.1  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    24   9.4  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    24   9.4  

>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 108 ELPRFSCTPECSWICAIR 55
           ELPRF   P+C ++C ++
Sbjct: 212 ELPRFPDDPKCRYLCELQ 229


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 44  TRGARIAQIQLHSGVHEKRGSSAS 115
           TR  RI Q  +HSG    +GS+++
Sbjct: 809 TRAVRIQQSNIHSGNTSGKGSNSA 832


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 109 SKFYWKITLPLLMLTKPPIS 168
           S  YW  T+P L L  P IS
Sbjct: 144 SSIYWSSTVPELALRNPNIS 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,393,687
Number of Sequences: 5004
Number of extensions: 24835
Number of successful extensions: 39
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)