Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n01
         (385 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0307 - 2194796-2199274                                           28   2.2  
03_01_0192 - 1534013-1535147,1535249-1535370,1535497-1535556,153...    27   5.1  
07_01_0117 + 894314-896677                                             26   8.9  

>07_01_0307 - 2194796-2199274
          Length = 1492

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +3

Query: 48  EVRELRKSNCTLVYTKNEAAQQVLL 122
           E+RELR  N   V+TK EAA+  LL
Sbjct: 798 ELRELRIDNLEKVHTKEEAAEAKLL 822


>03_01_0192 -
           1534013-1535147,1535249-1535370,1535497-1535556,
           1535666-1535764,1535839-1535889,1535974-1536175,
           1536709-1536911,1537264-1537350,1537435-1537589,
           1537640-1537723,1538121-1538325,1538497-1538724
          Length = 876

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = +3

Query: 15  IDPNTGPLSEREVRELRKSNCTLVYTKNEAAQQVLLENNFTAINADQTAYLKNYKSYREM 194
           I  + GP+S  +VR L KSN  L     E    V +E   T I   +  + K  K  +E+
Sbjct: 204 IGSSDGPVSLDDVRRLEKSNAELREQLEE--HVVTIETLRTQIKISEAQHEKELKELKEI 261


>07_01_0117 + 894314-896677
          Length = 787

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -2

Query: 90  CTPECSWICAIRAPLVRTAAPCW 22
           C+P C+W+  ++        PCW
Sbjct: 499 CSPLCNWVFKLQPSWQLLPGPCW 521


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,318,853
Number of Sequences: 37544
Number of extensions: 136926
Number of successful extensions: 285
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)