Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n01
         (385 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24621| Best HMM Match : DUF164 (HMM E-Value=0.39)                   31   0.24 
SB_17889| Best HMM Match : Patched (HMM E-Value=0.14)                  27   4.0  
SB_5445| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  
SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)       27   6.9  
SB_33937| Best HMM Match : DUF164 (HMM E-Value=0.11)                   27   6.9  
SB_380| Best HMM Match : AAA (HMM E-Value=0.14)                        27   6.9  
SB_58943| Best HMM Match : rve (HMM E-Value=6.1e-13)                   26   9.2  
SB_11670| Best HMM Match : TP2 (HMM E-Value=3.5)                       26   9.2  

>SB_24621| Best HMM Match : DUF164 (HMM E-Value=0.39)
          Length = 566

 Score = 31.5 bits (68), Expect = 0.24
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
 Frame = +1

Query: 67  NPTALWCTRKTRQLSKFYWKITLPLLMLTKPPIS---KTINHTEK*INKTKKV 216
           N T +  T+K   L+K    +T  LL LTK P+S   K ++ T+K ++ TKK+
Sbjct: 26  NSTLVHHTKKPLSLTKKLLSLTKKLLSLTKKPLSLTKKLLSLTKKPLSLTKKL 78



 Score = 30.7 bits (66), Expect = 0.43
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
 Frame = +1

Query: 88  TRKTRQLSKFYWKITLPLLMLTKPPIS---KTINHTEK*INKTKKV 216
           T+K + L+K    +T  LL LTK P+S   K ++ T+K ++ TKK+
Sbjct: 384 TKKLQSLTKKLLSLTKKLLSLTKKPLSLTKKLLSLTKKLLSLTKKL 429



 Score = 29.5 bits (63), Expect = 0.98
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
 Frame = +1

Query: 88  TRKTRQLSKFYWKITLPLLMLTKPPIS---KTINHTEK*INKTKKV 216
           T+K   L+K    +T  LL LTK P+S   K ++ T+K ++ TKK+
Sbjct: 412 TKKLLSLTKKLLSLTKKLLSLTKKPLSLTKKLLSLTKKPLSLTKKL 457



 Score = 27.5 bits (58), Expect = 4.0
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +1

Query: 88  TRKTRQLSKFYWKITLPLLMLTKPPIS---KTINHTEK*INKTKKV 216
           T+K   L+K    +T  LL LTK P+S   K ++ T+K  + TKK+
Sbjct: 236 TKKLLSLTKKLLSLTKKLLSLTKKPLSLTKKPLSLTKKLQSLTKKL 281


>SB_17889| Best HMM Match : Patched (HMM E-Value=0.14)
          Length = 925

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +3

Query: 9   CLIDPNTGPLSEREVRELRKSNCTLVYTKNEAAQQVLLENNFTAINADQ--TAYLKNYKS 182
           C +D     L + + + +  +N  L    N A  Q+L+ +N    N  Q   +Y + Y++
Sbjct: 646 CFVDKMNKYLKKEQKKPMYPNNTVLTLPTNGAKAQILMRHNGNIFNVSQLTDSYYRYYEA 705


>SB_5445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +3

Query: 9   CLIDPNTGPLSEREVRELRKSNCTLVYTKNEAAQQVL 119
           CLI P TG L  R  +   K +  L YT N A  Q L
Sbjct: 143 CLISPKTGLLELRGKKLKIKRDSLLNYTLNYAENQSL 179


>SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)
          Length = 976

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 69  SNCTLVYTKNEAAQQVLLENNFTAINAD 152
           SN  +  T+NE   QV LEN F  +  D
Sbjct: 317 SNVPVSVTENEVPGQVTLENEFVRVRLD 344


>SB_33937| Best HMM Match : DUF164 (HMM E-Value=0.11)
          Length = 296

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
 Frame = +1

Query: 88  TRKTRQLSKFYWKITLPLLMLTKPPIS---KTINHTEK*INKTKKV 216
           T+K + L+K    +T  LL LTK  +S   K ++ T+K ++ TKK+
Sbjct: 6   TKKLQSLTKKLLSLTKKLLSLTKKLLSLTKKLLSLTKKLLSLTKKL 51


>SB_380| Best HMM Match : AAA (HMM E-Value=0.14)
          Length = 508

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 81  LVYTKNEAAQQVLLENNFTAINADQTAYLKNYKSYREMN**NKKSLF-IYYLLTYK 245
           L YT+    Q   L++ F +   D  +   +Y+S R  +      L+ +YY LT+K
Sbjct: 374 LTYTRITPVQCCFLQDVFASSCVDNPSRSSHYRSVRNSHCLQTTCLYLVYYWLTHK 429


>SB_58943| Best HMM Match : rve (HMM E-Value=6.1e-13)
          Length = 1134

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 35  AVRTRGARIAQIQLHSGVHEKRGSSASFIGK 127
           AVR   A +A++QLH+   ++  +  SF G+
Sbjct: 127 AVREENAMVARVQLHNMRQDRNEAIRSFCGR 157


>SB_11670| Best HMM Match : TP2 (HMM E-Value=3.5)
          Length = 543

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 30  GPLSEREVRELRKSNCTLVYTKNEAAQQVL 119
           G L E+E+RE+ K   TL+  +    Q+VL
Sbjct: 38  GKLIEKELREISKVRATLMQIRKPPKQRVL 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,135,173
Number of Sequences: 59808
Number of extensions: 181049
Number of successful extensions: 555
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)