Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10n01
(385 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X94216-1|CAA63907.1| 419|Homo sapiens VEGF-C protein. 36 0.059
U58111-1|AAB02909.1| 419|Homo sapiens FLT4 ligand DHM protein. 36 0.059
U43142-1|AAA85214.1| 419|Homo sapiens vascular endothelial grow... 36 0.059
CR541897-1|CAG46695.1| 419|Homo sapiens VEGFC protein. 36 0.059
BC063685-1|AAH63685.1| 419|Homo sapiens vascular endothelial gr... 36 0.059
BC035212-1|AAH35212.1| 419|Homo sapiens vascular endothelial gr... 36 0.059
Y12864-1|CAA73371.1| 354|Homo sapiens growth factor FIGF protein. 31 1.3
Y12863-1|CAA73370.1| 354|Homo sapiens growth factor FIGF protein. 31 1.3
D89630-1|BAA24264.1| 354|Homo sapiens VEGF-D protein. 31 1.3
BC027948-1|AAH27948.1| 354|Homo sapiens c-fos induced growth fa... 31 1.3
AJ000185-1|CAA03942.1| 354|Homo sapiens vascular endothelial gr... 31 1.3
M73980-1|AAA60614.1| 2444|Homo sapiens TAN1 protein. 29 6.8
AL592301-5|CAI13934.1| 2555|Homo sapiens Notch homolog 1, transl... 29 6.8
AL354671-1|CAI16149.1| 2555|Homo sapiens Notch homolog 1, transl... 29 6.8
AF308602-1|AAG33848.1| 2556|Homo sapiens NOTCH 1 protein. 29 6.8
AB209873-1|BAD93110.1| 2067|Homo sapiens notch1 preproprotein va... 29 6.8
>X94216-1|CAA63907.1| 419|Homo sapiens VEGF-C protein.
Length = 419
Score = 35.5 bits (78), Expect = 0.059
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 49 RCANCANPTALWCTR-KTRQLSKFYWKITLPLLMLTKPPISKTINHT 186
RC C N L C T LSK ++IT+PL KP NHT
Sbjct: 161 RCGGCCNSEGLQCMNTSTSYLSKTLFEITVPLSQGPKPVTISFANHT 207
>U58111-1|AAB02909.1| 419|Homo sapiens FLT4 ligand DHM protein.
Length = 419
Score = 35.5 bits (78), Expect = 0.059
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 49 RCANCANPTALWCTR-KTRQLSKFYWKITLPLLMLTKPPISKTINHT 186
RC C N L C T LSK ++IT+PL KP NHT
Sbjct: 161 RCGGCCNSEGLQCMNTSTSYLSKTLFEITVPLSQGPKPVTISFANHT 207
>U43142-1|AAA85214.1| 419|Homo sapiens vascular endothelial growth
factor related protein protein.
Length = 419
Score = 35.5 bits (78), Expect = 0.059
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 49 RCANCANPTALWCTR-KTRQLSKFYWKITLPLLMLTKPPISKTINHT 186
RC C N L C T LSK ++IT+PL KP NHT
Sbjct: 161 RCGGCCNSEGLQCMNTSTSYLSKTLFEITVPLSQGPKPVTISFANHT 207
>CR541897-1|CAG46695.1| 419|Homo sapiens VEGFC protein.
Length = 419
Score = 35.5 bits (78), Expect = 0.059
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 49 RCANCANPTALWCTR-KTRQLSKFYWKITLPLLMLTKPPISKTINHT 186
RC C N L C T LSK ++IT+PL KP NHT
Sbjct: 161 RCGGCCNSEGLQCMNTSTSYLSKTLFEITVPLSQGPKPVTISFANHT 207
>BC063685-1|AAH63685.1| 419|Homo sapiens vascular endothelial
growth factor C protein.
Length = 419
Score = 35.5 bits (78), Expect = 0.059
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 49 RCANCANPTALWCTR-KTRQLSKFYWKITLPLLMLTKPPISKTINHT 186
RC C N L C T LSK ++IT+PL KP NHT
Sbjct: 161 RCGGCCNSEGLQCMNTSTSYLSKTLFEITVPLSQGPKPVTISFANHT 207
>BC035212-1|AAH35212.1| 419|Homo sapiens vascular endothelial
growth factor C protein.
Length = 419
Score = 35.5 bits (78), Expect = 0.059
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 49 RCANCANPTALWCTR-KTRQLSKFYWKITLPLLMLTKPPISKTINHT 186
RC C N L C T LSK ++IT+PL KP NHT
Sbjct: 161 RCGGCCNSEGLQCMNTSTSYLSKTLFEITVPLSQGPKPVTISFANHT 207
>Y12864-1|CAA73371.1| 354|Homo sapiens growth factor FIGF protein.
Length = 354
Score = 31.1 bits (67), Expect = 1.3
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 49 RCANCANPTALWCTR-KTRQLSKFYWKITLPLLMLTKPPISKTINHT 186
RC C N +L C T +SK ++I++PL + + K NHT
Sbjct: 141 RCGGCCNEESLICMNTSTSYISKQLFEISVPLTSVPELVPVKVANHT 187
>Y12863-1|CAA73370.1| 354|Homo sapiens growth factor FIGF protein.
Length = 354
Score = 31.1 bits (67), Expect = 1.3
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 49 RCANCANPTALWCTR-KTRQLSKFYWKITLPLLMLTKPPISKTINHT 186
RC C N +L C T +SK ++I++PL + + K NHT
Sbjct: 141 RCGGCCNEESLICMNTSTSYISKQLFEISVPLTSVPELVPVKVANHT 187
>D89630-1|BAA24264.1| 354|Homo sapiens VEGF-D protein.
Length = 354
Score = 31.1 bits (67), Expect = 1.3
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 49 RCANCANPTALWCTR-KTRQLSKFYWKITLPLLMLTKPPISKTINHT 186
RC C N +L C T +SK ++I++PL + + K NHT
Sbjct: 141 RCGGCCNEESLICMNTSTSYISKQLFEISVPLTSVPELVPVKVANHT 187
>BC027948-1|AAH27948.1| 354|Homo sapiens c-fos induced growth
factor (vascular endothelial growth factor D) protein.
Length = 354
Score = 31.1 bits (67), Expect = 1.3
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 49 RCANCANPTALWCTR-KTRQLSKFYWKITLPLLMLTKPPISKTINHT 186
RC C N +L C T +SK ++I++PL + + K NHT
Sbjct: 141 RCGGCCNEESLICMNTSTSYISKQLFEISVPLTSVPELVPVKVANHT 187
>AJ000185-1|CAA03942.1| 354|Homo sapiens vascular endothelial
growth factor D protein.
Length = 354
Score = 31.1 bits (67), Expect = 1.3
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 49 RCANCANPTALWCTR-KTRQLSKFYWKITLPLLMLTKPPISKTINHT 186
RC C N +L C T +SK ++I++PL + + K NHT
Sbjct: 141 RCGGCCNEESLICMNTSTSYISKQLFEISVPLTSVPELVPVKVANHT 187
>M73980-1|AAA60614.1| 2444|Homo sapiens TAN1 protein.
Length = 2444
Score = 28.7 bits (61), Expect = 6.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 236 NIQNLVH*CSNRFCSTPLSCYKTH 307
N QNLVH C + C C++TH
Sbjct: 1056 NCQNLVHWCDSSPCKNGGKCWQTH 1079
>AL592301-5|CAI13934.1| 2555|Homo sapiens Notch homolog 1,
translocation-associated (Drosophila) protein.
Length = 2555
Score = 28.7 bits (61), Expect = 6.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 236 NIQNLVH*CSNRFCSTPLSCYKTH 307
N QNLVH C + C C++TH
Sbjct: 1055 NCQNLVHWCDSSPCKNGGKCWQTH 1078
>AL354671-1|CAI16149.1| 2555|Homo sapiens Notch homolog 1,
translocation-associated (Drosophila) protein.
Length = 2555
Score = 28.7 bits (61), Expect = 6.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 236 NIQNLVH*CSNRFCSTPLSCYKTH 307
N QNLVH C + C C++TH
Sbjct: 1055 NCQNLVHWCDSSPCKNGGKCWQTH 1078
>AF308602-1|AAG33848.1| 2556|Homo sapiens NOTCH 1 protein.
Length = 2556
Score = 28.7 bits (61), Expect = 6.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 236 NIQNLVH*CSNRFCSTPLSCYKTH 307
N QNLVH C + C C++TH
Sbjct: 1056 NCQNLVHWCDSSPCKNGGKCWQTH 1079
>AB209873-1|BAD93110.1| 2067|Homo sapiens notch1 preproprotein
variant protein.
Length = 2067
Score = 28.7 bits (61), Expect = 6.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 236 NIQNLVH*CSNRFCSTPLSCYKTH 307
N QNLVH C + C C++TH
Sbjct: 567 NCQNLVHWCDSSPCKNGGKCWQTH 590
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,331,136
Number of Sequences: 237096
Number of extensions: 842234
Number of successful extensions: 5180
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5180
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2583773550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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