Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n01
         (385 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   6.5  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   6.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   6.5  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 121 WKITLPLLMLTKPPISKT 174
           WK  +P+ + T P  SKT
Sbjct: 206 WKDGIPVTLTTVPKHSKT 223


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 91  VYTRVQLDLRNSRTSRSDSGPVLGSI 14
           VYTR+ L +RNS T  + +  V G+I
Sbjct: 231 VYTRMGLKIRNS-TKDTLNSVVQGAI 255


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +3

Query: 3   IVCLIDPNTGPLSEREV 53
           + C  DPN  P+S  ++
Sbjct: 51  LFCEYDPNVRPISSHQI 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,667
Number of Sequences: 438
Number of extensions: 1876
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)